A request for some fairly large tables

[Ken Youens-Clark]

On Mar 24, 2005, at 1:45 PM, Smith-White, Brian (NIH/NLM/NCBI) wrote:

> To whom this may concern,
>
> We are updating the plant data in the NCBI Map Viewer. We wish to  
> enable
> functioning linkouts to the data-provider/current repository. To do  
> this for
> the rice maps requires a number of 2, or 3, column files/tables. The  
> query
> to amass the data can be achieved via the web. However the amount of  
> output
> exceeds the display boundaries. As an example searching for all markers
> (query string of "*") yields ~13,000 entries. If possible, could I  
> receive
> files with the output of an "all markers" query and the output of "all
> mutants" query?
>
> Thanks.
>
> Brian Smith-White
> NCBI

Brian,

Since I handle the marker database for Gramene, I can easily create  
whatever you need from that.  Note that our next release will contain  
far more than 13K markers -- we're up to almost 300K now!  See our  
development site for a sample:

	http://dev.gramene.org/db/markers/marker_view

Also, our structure has changed a bit.  We've now integrated species  
information better on this release, so the search options and resultset  
reflect that.

	http://dev.gramene.org/db/markers/marker_view? 
marker_name=*&marker_type_id=5&action=marker_search

I would be happy to send you a tab-delimited file showing marker name,  
synonyms, species and type for all the markers in our database.  Would  
that be sufficient?

ky