sequence files

[Pankaj Jaiswal]

Dear Nathan,

Please see my comments next to yours.


Nathan Haigh wrote:
> To whom it may concern
> 
>  
> 
> I am attempting to find the location of sequence files for Oryza sativa. 
> The files I would like to obtain (in order of preference) are 
> predicted/curated protein sequences, the cDNA for these sequences, 
> contig sequences, read files. 

I am forwarding your request to Kiran Kumar <kumark at cshl.org>. He will 
try to answer your query.

 > Ideally I would also like chloroplast and
> mitochondrial sequences to be included in these files……do you know the 
> best resource to obtain these sequence files?

Currently we are not providing information on organelle genomes except 
on the proteins encoded by them. My suggestion for you is toget this 
info from NCBI
Plastid:  http://www.ncbi.nlm.nih.gov/genomes/framik.cgi?db=Genome&gi=10013
Mitochondrial
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Display&dopt=pubmed_nucleotide&from_uid=12471441

Thanks
Pankaj
Gramene Database
gramene at gramene.org
>  
> 
> Regards
> 
>  
> 
> Nathan Haigh
> 
> University of York
> 
> England
>