Rice Genome View

[Immanuel Yap]

On Wed, Feb 04, 2004 at 03:29:06PM -0800, Harkamal Walia wrote:
> I am interested in generating a graphical view of rice genome from a
> list of gene models for which I have 5' and 3' end positions as well
> as the BAC/PAC names. Is there a feature in Gramene where I can plug
> in a list of these positions and generate a graphic displaying where
> these genes of interest sit on the genome. Thanks.

Gramene does not yet have the capability of drawing user-defined
features onto the genome view.  The closest you may get is to use the
CMap view to highlight the BAC/PAC names on the "Gramene TIGR Assembly
2003" map.  For example,

http://www.gramene.org/cmap/viewer?ref_map_set_aid=gtigr;ref_map_aid=gtigr-1;label_features=all;feature_types=;highlight=AP002953%20AP003211;data_source=Gramene

You can change the "Ref. Map" to view other chromosomes, and type in
BAC/PAC names into the "Highlight" box.

Noel
-- 
Immanuel Yap <ivy1 at cornell.edu>