transcript sequence and gene ontology

[Pankaj Jaiswal]

Dear Jérôme,

Currently we are providing annotations such as GO associations only to 
the proteins. However, we are planning to provide the 
gene-transcript-protein-GO mapping based on existing protein-GO mapping 
as requested by you in the next few months.

If you want to have something now, I suggest using the Sequence 
retrieval system at http://us.expasy.org/srs5/. There you can pull out 
all the EMBL DBXrefs/accessions mapped to a rice protein sequences.

Thanks
Pankaj

Jérôme Laroche wrote:

> Hi,
> 
> I am working on rice coding sequences, more exactly with the file 
> transcripts.fasta. I want to associate these rice cds to the Gene 
> Ontology. Unfortunetely, the only information I find on gene ontology 
> for rice is for peptide sequences or gene products, see the file 
> GO2Rice_GO:0003673. But I don't find in any files on the Gramene web 
> site, the way to link DNA transcript sequence with the gene ontology. If 
> even I
> 
> 
> Could you help me?
> 
> Jérôme Laroche
> 
> Professionnel d'enseignement et de recherche
> Centre de bioinformatique
> Pavillon Charles-Eugène-Marchand
> Université Laval
> tél: 418-656-2131 poste 6184
> fax: 418-656-7176
> www.bioinfo.ulaval.ca
> 
> 

-- 
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Pankaj Jaiswal, PhD
G15-Bradfield Hall
Dept. of Plant Breeding
Cornell University
Ithaca, NY-14853, USA

Tel: +1-607-255-3103
      +1-607-255-4109
Fax: +1-607-255-6683
http://www.gramene.org
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