Rice gene annotation

[Steven Schmidt]

Hi,

We have gene predictions from GenBank in the 'Submitted Genes'
track on the contigview and FgenesH predictions.
The FgenesH output is available at 
ftp://ftp.gramene.org/pub/gramene/protein/sequence/riceseq_fgenes_predictions_120402.dat.gz
We can also put fasta sequences of predicted peptides on our ftp site,
but since you mention xml, you probably want something more detailed.
What do you need?

-Steve

On Monday 24 March 2003 11:52, Thomas Girke wrote:
> Dear colleague,
>
> I have two questions regarding the data of the rice genome in the
> Gramene database base:
> 1) From which source are the gene predictions derived in your
> database? Are they from GenBank, TIGR, your own predictions or is a
> combination? 2) Which is the best source to download the entire set
> of annotation data? Are they available in xml format?
>
> Thanks for you help in advance,
>
> Thomas
>
>
>
>
> Thomas Girke
> Center for Plant Cell Biology (CEPCEB)
> Department of Botany and Plant Sciences
> University of California
> Riverside, CA 92521
>
> E-mail: thomas.girke at ucr.edu
> Website: www.cepceb.ucr.edu
> Ph: 909-787-2469
> Fax: 909-787-4437

-- 
Steven Schmidt
www.gramene.org
Cold Spring Harbor Laboratory
516-367-8892