Announcement from the Consortium for Maize Genomics

[Whitelaw, Cathy A.]

Dear Colleagues,

 

The Consortium for Maize Genomics is pleased to announce the release of
data and analysis from the third assembly of ~500,000
methylation-filtered (MF) and High C0t (HC) genomic sequences (Release
3.0) at http://www.tigr.org/tdb/tgi/maize/.  

 

Release 3.0 comprises four assemblies: 

(1) MF-only (Release3.0MF), 

(2) HC-only (Release3.0HC), 

(3) MF and HC combined (Release3.0ALL), 

(4) Unfiltered (UF) -- random shotgun reads generated from an unfiltered
maize genomic library -- (Release3.0UF).

 

For Release 3.0 assembly statistics summary, please visit:
http://www.tigr.org/tdb/tgi/maize/release3.0/assembly_summary.shtml

 

For Analysis of repetitive sequences in the maize genomic assemblies,
please visit:
http://www.tigr.org/tdb/tgi/maize/release3.0/repeat_analysis.shtml

 

For Gene matches to maize genomic sequences, please visit:

http://www.tigr.org/tdb/tgi/maize/release3.0/gene_matches.shtml

 

To Download the Release 3.0 assemblies, please visit:

ftp://ftp.tigr.org/pub/data/MAIZE/

 

 

****************************

WE'LL SEQUENCE YOUR MAIZE BAC

Follow the link for more information:
http://www.tigr.org/docs/tigr-scripts/tgi/mbac.pl

 

****************************

 

In addition we've updated the following features to reflect the
Release3.0 AZMs

---GENOME MAP BROWSER---

http://www.tigr.org/tigr-scripts/tgi/marker2.annotator.pl?species=combo_
marker

 

---MAIZE BAC VIEWER---

http://www.tigr.org/tigr-scripts/tgi/BAC.annotator.pl

 

---MAIZE BAC ANNOTATION---

http://www.tigr.org/tigr-scripts/tgi/egc_bac_annot.pl?data=BAC

 

---MAIZE REPEAT DATABASE---

Since the Release2.0 announcement, we have updated our database of maize
repetitive sequences which is available for download.  Please visit the
following link for more information:
http://www.tigr.org/tdb/tgi/maize/repeat_db.shtml 

 

 

 

In conjunction with the "Sequencing the Maize Genome" project we have
created a website for the general public (www.maizegenome.org
<http://www.maizegenome.org/> ) which aims to provide information and
updates relating to active maize genomic sequencing projects.  

 

 

We are constantly searching for ways to improve our website and to make
the data produced by the Consortium for Maize Genomics project easily
accessible and informative to the maize community. As always, we welcome
your feedback -- please e-mail us at http://www.tigr.org/tdb/tgi/maize/ .

 

 

Cathy Whitelaw (The Institute for Genomic Research)

Brad Barbazuk (Donald Danforth Plant Science Center)

 

This project is supported by NSF Plant Genome award, DBI-0221536 

 

 

 

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