New Gramene Release
Claire Hebbard
cer17 at cornell.edu
Mon Sep 11 14:13:14 EDT 2006
Gramene is proud to announce the release #22 of Gramene. For detailed
information on the newest updates, please see the release notes at
http://www.gramene.org/documentation/release_notes/releasenotes22.html.
Genomes: In an effort to improve navigation through the web-site,
there are significant changes to the page layout at Gramene's Genomes
module. Get an overview of this module with the Genomes tutorial at
www.gramene.org/tutorials/genomes.html.
Maps: Changes to the Maps search view simplify your map search, and
additional maps are now available. With significant changes to the
user interface, and more options available for viewing the maps, we
encourage you to review the user tutorial at
www.gramene.org/tutorials/cmap.html.
Markers: In addition to an increase in marker information, the new
detail information layout uses tabbed navigation to minimize
scrolling through long pages of information, putting information
right at your fingertips
Proteins: In addition to additional data, the Proteins database now
has an advanced search and links to the TIGR rice gene models for a
best match.
Ontologies: The Ontologies database has grown with additional
information, and has a few minor changes in the display.
Genes: Several hundred genes have map positions on commonly used
genetic maps, as well as the Gramene annotated Nipponbare Sequence
2006. In addition, the detail view for a gene has been enhanced to
provide more information.
QTL: Additions include information from O. Sativa crosses with wild
relatives, as well as Sorghum QTL.
Pathways: With addition pathways added since the first release, we
now present RiceCyc version 1.1.
Diversity: There has been significant growth of the Diversity
database, and a review this module's tutorial can provide a quick
overview to navigation (www.gramene.org/tutorials/diversity.html).
--
Sincerely,
The Gramene Database Team
*****************************************************************
Gramene(www.gramene.org) is a curated, open-source, web-accessible
data resource for comparative genome analysis in the grasses. Our
goal is to facilitate the study of cross-species homology
relationships using information derived from public projects involved
in genomic and EST sequencing, protein structure and function
analysis, genetic and physical mapping, interpretation of biochemical
pathways, gene and QTL localization and descriptions of phenotypic
characters and mutations.
*****************************************************************
This work is funded by the National Science Foundation (NSF) and the
USDA-Agricultural Research Service, and was previously funded by the USDA
Initiative for Future Agriculture and Food Systems (IFAFS). We are thankful
to numerous collaborators and contributors for help in curation and for
sharing their datasets and tools.
*****************************************************************
The Gramene-announce listserve is used to notify registered users of
timely information concerning Gramene (www.gramene.org) or the rice
community. If you want to unsubscribe from this mailing list, you can
send mail to <Majordomo at brie4.cshl.org> with the following command in
the body of your email message: unsubscribe gramene-announce
This mailing list is only for announcements by Gramene developers.
To correspond with Gramene developers and users, subscribe to the
gramene list by sending an email to majordomo at gramene.org and in the body
of the e-mail (not the subject line) write: subscribe gramene . You
may also contact the Gramene team through the "Feedback" button at
the top of the Gramene website.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://brie4.cshl.edu/pipermail/gramene-announce/attachments/20060911/fd757cc1/attachment.html>
More information about the Gramene-announce
mailing list