[Gmod-help] Installation issues

[Scott Cain]

Hi Josh,

I'm cc'ing this to the GBrowse mailing list; we can trim the help list
out of the cc list when we reply-all.

I don't think most people go in via the "perl Makefile.PL" path, so I
don't know if there is anything odd going on there.  Do you have
configuration files in /etc/gbrowse2?

Scott


On Wed, Jul 13, 2011 at 11:47 AM, Josh Earl <JEARL at wpahs.org> wrote:
> Hello,
>
>
>
> I’ve (mostly) successfully installed gbrowse 2.33 on a server in our lab.  I
> can access index.html from other computers on our network, and generally all
> the links which do not redirect to cgi scripts run fine.  However, none of
> the examples (for instance all the different yeast examples) come up with
> the expected interface.  The logs for the httpd server show these errors
> when I try to click on the “simple” yeast example:
>
>
>
> [Wed Jul 13 11:39:12 2011] [error] [client 10.254.10.67] Use of
> uninitialized value in join or string at
> /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2/DataSource.pm
> line 878., referer: http://10.255.6.59/
>
> [Wed Jul 13 11:39:12 2011] [error] [client 10.254.10.67] Unknown database
> defined for general at
> /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2/DataSource.pm
> line 884., referer: http://10.255.6.59/
>
> [Wed Jul 13 11:39:12 2011] [error] [client 10.254.10.67] Could not open
> database: Can't call method "new" on an undefined value at
> /usr/lib64/perl5/site_perl/5.8.8/x86_64-linux-thread-multi/Bio/Graphics/Browser2/DataBase.pm
> line 45., referer: http://10.255.6.59/
>
> [Wed Jul 13 11:39:12 2011] [error] [client 10.254.10.67] Premature end of
> script headers: gbrowse, referer: http://10.255.6.59/
>
>
>
> The server is running centos 5.5, when I installed gbrowse I used this
> command:
>
>
>
> # perl Makefile.PL CONF=/etc/httpd HTDOCS=/var/www/html
> CGIBIN=/var/www/cgi-bin DO_XS=1
>
>
>
> Then:
>
> # ./Build test
>
> # ./Build install
>
>
>
> Anyone know what is going on??
>
> Thanks
>
> ~josh
>
> **********************************************************************
> This email and any files transmitted with it are confidential and
> intended solely for the use of the individual or entity to whom they
> are addressed. If you have received this email in error please notify
> the West Penn Allegheny Health System Help Desk at 412 330-4357.
> **********************************************************************
>



-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research