[Gmod-help] RE: Maker questions

[Yecheng Huang]

 Dave,
Carson responded and solved our problem, thanks for your help,

Yecheng Huang

Research Computing Center
University of Georgia

http://www.rcc.uga.edu
706-542-9071

________________________________
From: clementsnescent at gmail.com [clementsnescent at gmail.com] on behalf of Dave Clements [clements at nescent.org]
Sent: Wednesday, November 10, 2010 11:09 AM
To: MAKER Developers List; Yecheng Huang; joshbridgers at gmail.com; help at gmod.org
Subject: Maker questions

Hi Yeching,

I'm forwarding this to the MAKER list, which is the best place to post MAKER questions.

The help at gmod.org<mailto:help at gmod.org> address can be dropped from future correspondence.

Dave C

Forwarded conversation
Subject: [Gmod-help] Maker questions
------------------------

From: Yecheng Huang <yhuang at uga.edu<mailto:yhuang at uga.edu>>
Date: Wed, Nov 10, 2010 at 12:48 AM
To: "help at gmod.org<mailto:help at gmod.org>" <help at gmod.org<mailto:help at gmod.org>>
Cc: "joshbridgers at gmail.com<mailto:joshbridgers at gmail.com>" <joshbridgers at gmail.com<mailto:joshbridgers at gmail.com>>


 Hi,
We have installed Maker at our linux 64 bit with gcc compiler.
We have installed all required packages except FGENESH, we are working on get the license.

The install process is smooth. There is no complain/errors during installation.

When we follow the steps at testing samples (http://gmod.org/wiki/MAKER_Tutorial#RUNNING_MAKER_WITH_EXAMPLE_DATA ),
we got errors as:
WARNING: Cannot find> dpp-CDS-1, trying to re-index the fasta.
stop here:dpp-CDS-1
ERROR: Fasta index error

FATAL ERROR
ERROR: Failed while doing exonerate of proteins!!

ERROR: Chunk failed at level 14
!!
FAILED CONTIG:contig-dpp-500-500

------------

I have attached the control files and running log"maker.log" at the email.

Any advise would be greatly appreciated.


sincerely,
Yecheng Huang

Research Computing Center
University of Georgia

http://www.rcc.uga.edu
706-542-9071


----------
From: Yecheng Huang <yhuang at uga.edu<mailto:yhuang at uga.edu>>
Date: Wed, Nov 10, 2010 at 12:52 AM
To: "help at gmod.org<mailto:help at gmod.org>" <help at gmod.org<mailto:help at gmod.org>>
Cc: "joshbridgers at gmail.com<mailto:joshbridgers at gmail.com>" <joshbridgers at gmail.com<mailto:joshbridgers at gmail.com>>


 Here are the attached control files and log file.
Thanks,

________________________________
From: Yecheng Huang
Sent: Wednesday, November 10, 2010 12:48 AM
To: help at gmod.org<mailto:help at gmod.org>
Cc: joshbridgers at gmail.com<mailto:joshbridgers at gmail.com>
Subject: Maker questions





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