[Gmod-help] Maker questions

[Dave Clements]

Hi Yeching,

I'm forwarding this to the MAKER list, which is the best place to post MAKER
questions.

The help at gmod.org address can be dropped from future correspondence.

Dave C

Forwarded conversation
Subject: [Gmod-help] Maker questions
------------------------

From: *Yecheng Huang* <yhuang at uga.edu>
Date: Wed, Nov 10, 2010 at 12:48 AM
To: "help at gmod.org" <help at gmod.org>
Cc: "joshbridgers at gmail.com" <joshbridgers at gmail.com>


  Hi,
We have installed Maker at our linux 64 bit with gcc compiler.
We have installed all required packages except FGENESH, we are working on
get the license.

The install process is smooth. There is no complain/errors during
installation.

When we follow the steps at testing samples (
http://gmod.org/wiki/MAKER_Tutorial#RUNNING_MAKER_WITH_EXAMPLE_DATA ),
we got errors as:
WARNING: Cannot find> dpp-CDS-1, trying to re-index the fasta.
stop here:dpp-CDS-1
ERROR: Fasta index error

FATAL ERROR
ERROR: Failed while doing exonerate of proteins!!

ERROR: Chunk failed at level 14
!!
FAILED CONTIG:contig-dpp-500-500

------------

I have attached the control files and running log"maker.log" at the email.

Any advise would be greatly appreciated.


 sincerely,
Yecheng Huang

Research Computing Center
University of Georgia

http://www.rcc.uga.edu
706-542-9071


----------
From: *Yecheng Huang* <yhuang at uga.edu>
Date: Wed, Nov 10, 2010 at 12:52 AM
To: "help at gmod.org" <help at gmod.org>
Cc: "joshbridgers at gmail.com" <joshbridgers at gmail.com>


  Here are the attached control files and log file.
Thanks,

 ------------------------------
*From:* Yecheng Huang
*Sent:* Wednesday, November 10, 2010 12:48 AM
*To:* help at gmod.org
*Cc:* joshbridgers at gmail.com
*Subject:* Maker questions





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