[Gmod-help] Re: [Gmod-gbrowse] gbrowse_details script

[Alaguraj Veluchamy]

I have given a unique name so that gbrowse_details work, and i have grouped
them on xyplot based on an attribute parameter (key value pair). But the
gbrowse_details script works only on name. I believe it must work on method,
start, end etc.

Thanks much for your help.
Regards,
Alaguraj.V

On Thu, Jul 22, 2010 at 1:06 AM, Dave Clements, GMOD Help Desk <
help at gmod.org> wrote:

> Dear Alaguraj,
>
> Have you tried adding a unique ID to each line?  Names are not required to
> be unique,
>

> Dave C.
>
> On Wed, Jul 14, 2010 at 8:51 AM, Alaguraj Veluchamy <alaguraj.v at gmail.com>wrote:
>
>> Dear all,
>> I am trying to set balloon click with link to the feature details.
>> gbrowse_details script seems to search only $name and not other parameters
>> ($method )
>> eg: <a
>> href="/cgi-bin/gbrowse_details?class=$class;$name=name;method=$method&id=$id&start=$start&end=$end"
>> target=_blank>
>>
>> I have many entries with same "name" in different feature like this:
>>
>> chr2    solexa  LL_transcript      440690  440774  -0.903089986992 -
>> .
>> type=lltranscript;Name=chr2_69557;MaxCoverage=10;MaxCovDark=2;MaxCovIron=0;MaxCovHL=0;MaxCovNL=2;MaxCovLL=7;xyandgene=11658
>>
>>
>> chr2    solexa   MM_transcript    440573  440600  -0.47712125472  -
>> .
>> type=mmtranscript;Name=chr2_69557;MaxCoverage=4;MaxCovDark=0;MaxCovIron=2;MaxCovHL=0;MaxCovNL=1;MaxCovLL=1;xyandgene=20757
>>
>> The problem for me  is:
>> When i click on the LL_transcript glyph it shows the MM_transcript
>> details.If i delete the $name parameter in href, it doesnt function. how to
>> link in such a way that all parameters are exactly searched. It seems
>> gbrowse_details searches a minimum match ie atleast one parameter is matched
>> or almost similar.
>>
>> Thanks for your help,
>> Alaguraj.V
>>
>>
>>
>>
>>
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>
>
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