[Gmod-help] Re: [Gmod-gbrowse] Gbrowse: "plugin has not been configured"

[joseph franklin]

That was definitely my problem--my individual config files were lacking "plugin =" lines, as I was attempting to configure plugins in the main GBrowse.conf.  Adding the line to the other ".conf" files fixed it.
Thanks-joe

On 15 Jan 2010, at 12:30, Sheldon McKay wrote:

> Hi Joseph,
> 
> This should be fixed in a fresh svn checkout but...
> 
> In the yeast simple conf (yeast_simple.conf), add the word
> 'FastaDumper' to the 'plugin =' line.
> In the yeast complex example (yeast_chr1+2.conf), comment out the
> first 'plugin=' line wiht a '#" because it is overriding the correct
> option lower in the file.
> 
> In general, make sure that the plugin you need is listed in the
> 'plugin' option in the config file.
> 
> 
> ----
> Sheldon McKay, PhD
> Lead, iPlant Tree of Life Engagement Team;
> Research Investigator
> Cold Spring Harbor Laboratory
> http://mckay.cshl.edu
> Google Voice:  (203) 701-9204
> 
> 
> 
> 
> On Fri, Jan 15, 2010 at 9:05 AM, joseph franklin
> <joseph.franklin at yale.edu> wrote:
>> Hi,
>> I turned on the "plugin_debug" feature, to see if I could get any information about why FastaDumper isn't working when "Dump selection as FASTA" is clicked in the Details selection menu.  I get the following message in the apache2 error log:
>> 
>> ________
>> an operation was requested on plugin FastaDumper, but this plugin has not been configured at /usr/local/lib/perl/5.10.0/Bio/Graphics/Browser2/Render.pm line 1318.
>> ________
>> 
>> Everything else seems to be working fine, except for that (i'm using the most recent version from SVN).  Any suggestions for fixing it?
>> 
>> thanks-
>> Joe
>> 
>> 
>> 
>> 
>> 
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