[Gmod-help] What is this?

[fernando bueno]

Hi,

I'm using  gmod_bulk_load_gff3,pl to insert a genbank on my chado database.
The following messages pop up all time, and I don't know if the data is
correctlly inserted.
Is there something you can do to help me with this issue?

Thanks,

Fernado




There is a CDS feature with no parent (ID:gamma-gliadin)  I think that is
wrong!

this shouldn't happen in modified_uniquename at
/usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 2647

Bio::GMOD::DB::Adapter::modified_uniquename('Bio::GMOD::DB::Adapter=HASH(0x9938910)',
'orig_id', undef) called at
/usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 3604

Bio::GMOD::DB::Adapter::handle_CDS('Bio::GMOD::DB::Adapter=HASH(0x9938910)',
'Bio::SeqFeature::Annotated=HASH(0xaf275e8)') called at
/usr/local/bin/gmod_bulk_load_gff3.pl line 756


There is a CDS feature with no parent (ID:gamma-gliadin)  I think that is
wrong!

this shouldn't happen in modified_uniquename at
/usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 2647

Bio::GMOD::DB::Adapter::modified_uniquename('Bio::GMOD::DB::Adapter=HASH(0x9938910)',
'orig_id', undef) called at
/usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 3604

Bio::GMOD::DB::Adapter::handle_CDS('Bio::GMOD::DB::Adapter=HASH(0x9938910)',
'Bio::SeqFeature::Annotated=HASH(0xaf4aa60)') called at
/usr/local/bin/gmod_bulk_load_gff3.pl line 756


There is a CDS feature with no parent (ID:cystatin)  I think that is wrong!

this shouldn't happen in modified_uniquename at
/usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 2647

Bio::GMOD::DB::Adapter::modified_uniquename('Bio::GMOD::DB::Adapter=HASH(0x9938910)',
'orig_id', undef) called at
/usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 3604

Bio::GMOD::DB::Adapter::handle_CDS('Bio::GMOD::DB::Adapter=HASH(0x9938910)',
'Bio::SeqFeature::Annotated=HASH(0xaf7f338)') called at
/usr/local/bin/gmod_bulk_load_gff3.pl line 756


There is a CDS feature with no parent (ID:HPPK/DHPS)  I think that is wrong!

this shouldn't happen in modified_uniquename at
/usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 2647

Bio::GMOD::DB::Adapter::modified_uniquename('Bio::GMOD::DB::Adapter=HASH(0x9938910)',
'orig_id', undef) called at
/usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 3604

Bio::GMOD::DB::Adapter::handle_CDS('Bio::GMOD::DB::Adapter=HASH(0x9938910)',
'Bio::SeqFeature::Annotated=HASH(0xaf8c528)') called at
/usr/local/bin/gmod_bulk_load_gff3.pl line 756
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