Hi, <br><br>I'm using gmod_bulk_load_gff3,pl to insert a genbank on my chado database. The following messages pop up all time, and I don't know if the data is correctlly inserted.<br>Is there something you can do to help me with this issue?<br>
<br>Thanks,<br><br>Fernado<br><br><br><br><br>There is a CDS feature with no parent (ID:gamma-gliadin) I think that is wrong!<br><br>this shouldn't happen in modified_uniquename at /usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 2647<br>
Bio::GMOD::DB::Adapter::modified_uniquename('Bio::GMOD::DB::Adapter=HASH(0x9938910)', 'orig_id', undef) called at /usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 3604<br> Bio::GMOD::DB::Adapter::handle_CDS('Bio::GMOD::DB::Adapter=HASH(0x9938910)', 'Bio::SeqFeature::Annotated=HASH(0xaf275e8)') called at /usr/local/bin/gmod_bulk_load_gff3.pl line 756<br>
<br><br>There is a CDS feature with no parent (ID:gamma-gliadin) I think that is wrong!<br><br>this shouldn't happen in modified_uniquename at /usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 2647<br> Bio::GMOD::DB::Adapter::modified_uniquename('Bio::GMOD::DB::Adapter=HASH(0x9938910)', 'orig_id', undef) called at /usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 3604<br>
Bio::GMOD::DB::Adapter::handle_CDS('Bio::GMOD::DB::Adapter=HASH(0x9938910)', 'Bio::SeqFeature::Annotated=HASH(0xaf4aa60)') called at /usr/local/bin/gmod_bulk_load_gff3.pl line 756<br><br><br>There is a CDS feature with no parent (ID:cystatin) I think that is wrong!<br>
<br>this shouldn't happen in modified_uniquename at /usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 2647<br> Bio::GMOD::DB::Adapter::modified_uniquename('Bio::GMOD::DB::Adapter=HASH(0x9938910)', 'orig_id', undef) called at /usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 3604<br>
Bio::GMOD::DB::Adapter::handle_CDS('Bio::GMOD::DB::Adapter=HASH(0x9938910)', 'Bio::SeqFeature::Annotated=HASH(0xaf7f338)') called at /usr/local/bin/gmod_bulk_load_gff3.pl line 756<br><br><br>There is a CDS feature with no parent (ID:HPPK/DHPS) I think that is wrong!<br>
<br>this shouldn't happen in modified_uniquename at /usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 2647<br> Bio::GMOD::DB::Adapter::modified_uniquename('Bio::GMOD::DB::Adapter=HASH(0x9938910)', 'orig_id', undef) called at /usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm line 3604<br>
Bio::GMOD::DB::Adapter::handle_CDS('Bio::GMOD::DB::Adapter=HASH(0x9938910)', 'Bio::SeqFeature::Annotated=HASH(0xaf8c528)') called at /usr/local/bin/gmod_bulk_load_gff3.pl line 756<br><br><br>