[Gmod-help] plugin Aligner.pm and MySQL syntax
Davide Rambaldi CNR
davide.rambaldi at itb.cnr.it
Mon Jul 20 06:19:01 EDT 2009
Hi, I have a server with an instance of gbrowse version 1.69 (with MySQL
DBI adaptor)
I have decided to add the plugin Aligner.pm and I have as result an
empty page and this EXCEPTION:
-------------------- EXCEPTION --------------------, referer:
http://155.253.41.215/cgi-bin/gbrowse/charcot/
MSG: You have an error in your SQL syntax; check the manual that
corresponds to your MySQL server version for the right syntax to use
near '), referer: http://155.253.41.215/cgi-bin/gbrowse/charcot/
)' at line 12, referer: http://155.253.41.215/cgi-bin/gbrowse/charcot/
STACK Bio::DB::SeqFeature::Store::DBI::mysql::_features
/usr/local/share/perl/5.10.0/Bio/DB/SeqFeature/Store/DBI/mysql.pm:851,
referer: http://155.253.41.215/cgi-bin/gbrowse/charcot/
STACK Bio::DB::SeqFeature::Store::features
/usr/local/share/perl/5.10.0/Bio/DB/SeqFeature/Store.pm:1067, referer:
http://155.253.41.215/cgi-bin/gbrowse/charcot/
STACK Bio::DB::SeqFeature::Segment::features
/usr/local/share/perl/5.10.0/Bio/DB/SeqFeature/Segment.pm:201, referer:
http://155.253.41.215/cgi-bin/gbrowse/charcot/
STACK Bio::Graphics::Browser::Plugin::Aligner::dump
/etc/apache2/gbrowse.conf/plugins/Aligner.pm:159, referer:
http://155.253.41.215/cgi-bin/gbrowse/charcot/
STACK main::do_plugin_dump /usr/lib/cgi-bin/gbrowse:3439, referer:
http://155.253.41.215/cgi-bin/gbrowse/charcot/
STACK toplevel /usr/lib/cgi-bin/gbrowse:237, referer:
http://155.253.41.215/cgi-bin/gbrowse/charcot/
-------------------------------------------, referer:
http://155.253.41.215/cgi-bin/gbrowse/charcot/
Seems that the query to MySQL have a syntax error... any solution
avaliable for this bug?
Thanks
Davide R
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