[Gmod-help] Problem on using berkeleydb

Kazushi Hiranuka hiranuka at kuicr.kyoto-u.ac.jp
Thu Jul 16 03:14:46 EDT 2009


Hi,

I'm currently setting up Gbrowse for mapping and viewing full-length
cDNA data, and most of the features work fine.
One problem is that I tried to use "draw_target" configuration as in
2.8.1 of Tutorial but Gbrowse didn't show the multiple alignment at high
magnification. Without any other changes, however, just switching
database adaptor setting from berkeleydb to on-memory solved the problem
and displayed sequence alignments correctly as well as "show_mismatch"
feature.

Is there any solution reported on this problem? Will it work correctly
in mySQL as well?
Since I don't like non-root restriction of mySQL in the server and don't
want to use on-memory adaptor, it will be nice for me to keep using
berkelydb.

Thank you for your time,

Kazushi Hiranuka
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