[Gmod-help] Re: [Gmod-gbrowse] /usr/bin/perl hard-coded?

[Erick Antezana]

Hi Dave,

  yes, we have two different installations (/usr/bin/perl (5.8)and
/usr/local/bin/perl (5.10)). The one we want to use with GBrowse 2.0 is
/usr/local/bin/perl

 I've sent to Lincoln (offline) some hard-coded /usr/bin/perl's references
(as well as other ones such as "gbrowse2"). He is busy working on the "gb2"
case. In the mean time, I replaced automatically the "/usr/bin/perl"
ocurrences by "/usr/local/bin/perl".

cheers,
Erick


2009/7/14 Dave Clements, GMOD Help Desk <gmodhelp at googlemail.com>

> Hi Erick,
>
> Are you asking this because /usr/bin/perl and /usr/local/bin/perl
> contain different installations of Perl on your system, or because you
> are not allowed to set /usr/bin/perl to point to /usr/local/bin/perl?
>
> The common wisdom on the web is to make one be a sym lnk to the other.
>
> I suppose that this could be made another configuration option.
>
> Dave C
>
> On Tue, Jul 7, 2009 at 9:15 AM, Erick Antezana<erick.antezana at gmail.com>
> wrote:
> > Hi,
> >
> >   I have just CVS-updated my local GBrowse 2.0. I have installed it using
> my
> > perl located at : /usr/local/bin/perl ; however, the following list of
> files
> > have "/usr/bin/perl" (instead of /usr/local/bin/perl):
> >
> > ./cgi-bin/gb2/gbrowse_gmap
> > ./cgi-bin/gb2/gbgff
> > ./cgi-bin/gb2/gbrowse_img
> > ./cgi-bin/gb2/gbrowse
> > ./cgi-bin/gb2/gbrowse_details
> > ./conf/MobyServices/GbrowseServices.pm.new
> > ./html/gbrowse_karyotype_help.html
> > ./html/tutorial/bin/expression_levels.pl
> > ./html/tutorial/bin/reformat.pl
> > ./html/tutorial/bin/random_dna.pl
> > ./html/tutorial/bin/random_segments.pl
> > ./html/tutorial/bin/random_feature.pl
> > ./html/tutorial/bin/make_exon.pl
> >
> > Are those paths hard-coded?
> >
> > thanks,
> > Erick
> >
> >
> >
> >
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