Hi Dave,<br><br> yes, we have two different installations (/usr/bin/perl (5.8)and /usr/local/bin/perl (5.10)). The one we want to use with GBrowse 2.0 is /usr/local/bin/perl<br> <br> I've sent to Lincoln (offline) some hard-coded /usr/bin/perl's references (as well as other ones such as "gbrowse2"). He is busy working on the "gb2" case. In the mean time, I replaced automatically the "/usr/bin/perl" ocurrences by "/usr/local/bin/perl".<br>
<br>cheers,<br>Erick<br><br><br><div class="gmail_quote">2009/7/14 Dave Clements, GMOD Help Desk <span dir="ltr"><<a href="mailto:gmodhelp@googlemail.com">gmodhelp@googlemail.com</a>></span><br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi Erick,<br>
<br>
Are you asking this because /usr/bin/perl and /usr/local/bin/perl<br>
contain different installations of Perl on your system, or because you<br>
are not allowed to set /usr/bin/perl to point to /usr/local/bin/perl?<br>
<br>
The common wisdom on the web is to make one be a sym lnk to the other.<br>
<br>
I suppose that this could be made another configuration option.<br>
<br>
Dave C<br>
<div><div></div><div class="h5"><br>
On Tue, Jul 7, 2009 at 9:15 AM, Erick Antezana<<a href="mailto:erick.antezana@gmail.com">erick.antezana@gmail.com</a>> wrote:<br>
> Hi,<br>
><br>
> I have just CVS-updated my local GBrowse 2.0. I have installed it using my<br>
> perl located at : /usr/local/bin/perl ; however, the following list of files<br>
> have "/usr/bin/perl" (instead of /usr/local/bin/perl):<br>
><br>
> ./cgi-bin/gb2/gbrowse_gmap<br>
> ./cgi-bin/gb2/gbgff<br>
> ./cgi-bin/gb2/gbrowse_img<br>
> ./cgi-bin/gb2/gbrowse<br>
> ./cgi-bin/gb2/gbrowse_details<br>
> ./conf/MobyServices/GbrowseServices.pm.new<br>
> ./html/gbrowse_karyotype_help.html<br>
> ./html/tutorial/bin/expression_levels.pl<br>
> ./html/tutorial/bin/reformat.pl<br>
> ./html/tutorial/bin/random_dna.pl<br>
> ./html/tutorial/bin/random_segments.pl<br>
> ./html/tutorial/bin/random_feature.pl<br>
> ./html/tutorial/bin/make_exon.pl<br>
><br>
> Are those paths hard-coded?<br>
><br>
> thanks,<br>
> Erick<br>
><br>
><br>
><br>
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