[Gmod-help] Re: [Gmod-gbrowse] xyplot - boxes neg_color fill, misconfiguration or bug?

[mark meyer]

We too see that same effect on our data.  I have not been able to remedy it
either.  we are running 1.70

Mark

On Fri, Dec 18, 2009 at 2:13 AM, Keiran Raine <kr2 at sanger.ac.uk> wrote:

> Hi,
>
> This is in 1.997.
>
> Thanks
>
> BTW, I got an undeliverable notification from help at gmod.org when I first sent this.
>
>
>
>
> Keiran Raine
> Senior Computer Biologist
> The Cancer Genome Project
> Ext: 2100
> kr2 at sanger.ac.uk
>
> The Wellcome Trust Sanger Institute is operated by Genome Research
> Limited, a charity registered in England with number 1021457 and a
> company registered in England with number 2742969, whose registered
> office is 215 Euston Road, London, NW1 2BE.
>
>
>
>  On 17 Dec 2009, at 23:28, Dave Clements, GMOD Help Desk wrote:
>
>  Hi Keiran,
>
> This definitely sounds like a bug to me.  What specific version of GBrowse
> are you seeing this in?
>
> I'll create a bug report for it.
>
> Dave C
>
>  On Thu, Dec 10, 2009 at 3:38 AM, Keiran Raine <kr2 at sanger.ac.uk> wrote:
>
>>  Hi,
>>
>> When I use the bicolor_pivoit option on the box form of xyplot I am
>> finding that the elements below the threshold, although the correct outline
>> colour, have no fill:
>>
>> <Picture 1.png>
>>
>>
>> Has anyone else had this problem?
>>
>>  [segmentXyplot]
>> feature        = parent_segment
>> glyph          = xyplot
>> graph_type   = boxes
>> fgcolor        = black
>> bicolor_pivot  = 2
>> pos_color      = blue
>> neg_color      = red
>> database       = GRC37_56
>> max_score      = 5
>> min_score   = 0
>> height         = 50
>> key            = Segmentation
>> category       = Copy number
>> label          = 0
>>
>>    The perldoc for this element indicates that the fill should be taken
>> from the neg_color.
>>
>> Thanks,
>>
>> Keiran Raine
>> Senior Computer Biologist
>> The Cancer Genome Project
>> Ext: 2100
>> kr2 at sanger.ac.uk
>>
>> The Wellcome Trust Sanger Institute is operated by Genome Research
>> Limited, a charity registered in England with number 1021457 and a
>> company registered in England with number 2742969, whose registered
>> office is 215 Euston Road, London, NW1 2BE.
>>
>>
>>
>>
>> -- The Wellcome Trust Sanger Institute is operated by Genome Research
>> Limited, a charity registered in England with number 1021457 and a compa ny
>> registered in England with number 2742969, whose registered office is 2 15
>> Euston Road, London, NW1 2BE.
>>
>>
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>
>
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>
> -- The Wellcome Trust Sanger Institute is operated by Genome Research
> Limited, a charity registered in England with number 1021457 and a compa ny
> registered in England with number 2742969, whose registered office is 2 15
> Euston Road, London, NW1 2BE.
>
>
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