[Gmod-help] Re: [Gmod-gbrowse] xyplot - boxes neg_color fill, misconfiguration or bug?

[Keiran Raine]

Hi,

This is in 1.997.

Thanks

BTW, I got an undeliverable notification from help at gmod.org when I  
first sent this.


Keiran Raine
Senior Computer Biologist
The Cancer Genome Project
Ext: 2100
kr2 at sanger.ac.uk

The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in England with number 2742969, whose registered
office is 215 Euston Road, London, NW1 2BE.



On 17 Dec 2009, at 23:28, Dave Clements, GMOD Help Desk wrote:

> Hi Keiran,
>
> This definitely sounds like a bug to me.  What specific version of  
> GBrowse are you seeing this in?
>
> I'll create a bug report for it.
>
> Dave C
>
> On Thu, Dec 10, 2009 at 3:38 AM, Keiran Raine <kr2 at sanger.ac.uk>  
> wrote:
> Hi,
>
> When I use the bicolor_pivoit option on the box form of xyplot I am  
> finding that the elements below the threshold, although the correct  
> outline colour, have no fill:
>
> <Picture 1.png>
>
> Has anyone else had this problem?
>
> [segmentXyplot]
> feature        = parent_segment
> glyph          = xyplot
> graph_type     = boxes
> fgcolor        = black
> bicolor_pivot  = 2
> pos_color      = blue
> neg_color      = red
> database       = GRC37_56
> max_score      = 5
> min_score      = 0
> height         = 50
> key            = Segmentation
> category       = Copy number
> label          = 0
>
> The perldoc for this element indicates that the fill should be taken  
> from the neg_color.
>
> Thanks,
>
> Keiran Raine
> Senior Computer Biologist
> The Cancer Genome Project
> Ext: 2100
> kr2 at sanger.ac.uk
>
> The Wellcome Trust Sanger Institute is operated by Genome Research
> Limited, a charity registered in England with number 1021457 and a
> company registered in England with number 2742969, whose registered
> office is 215 Euston Road, London, NW1 2BE.
>
>
>
>
> -- The Wellcome Trust Sanger Institute is operated by Genome  
> Research Limited, a charity registered in England with number  
> 1021457 and a compa ny registered in England with number 2742969,  
> whose registered office is 2 15 Euston Road, London, NW1 2BE. 
>
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-- 
 The Wellcome Trust Sanger Institute is operated by Genome Research 
 Limited, a charity registered in England with number 1021457 and a 
 company registered in England with number 2742969, whose registered 
 office is 215 Euston Road, London, NW1 2BE. 
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