[Gmod-help] Problems to Insert a Genbank in Chado
fernando bueno
stradlinbueno at gmail.com
Wed Aug 26 13:57:28 EDT 2009
Hello
I have downloaded from Ncbi genbanks of Triticum and used the script
bp_genbank2gff3.pl
to convert this genbanks to Gff3.
when a use the gmod_bulk_load_gff3.pl to insert this errors appears
1-
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: no cvterm for mature_peptide
STACK: Error::throw
STACK: Bio::Root::Root::throw
/usr/local/share/perl/5.10.0/Bio/Root/Root.pm:357
STACK: Bio::GMOD::DB::Adapter::get_type
/usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm:4224
STACK: /usr/local/bin/gmod_bulk_load_gff3.pl:783
-----------------------------------------------------------
Issuing rollback() due to DESTROY without explicit disconnect() of
DBD::Pg::db handle dbname=chado;port=5432;host=localhost at
/usr/local/share/perl/5.10.0/Error.pm line 184.
2-
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: no cvterm for pseudoCDS
STACK: Error::throw
STACK: Bio::Root::Root::throw
/usr/local/share/perl/5.10.0/Bio/Root/Root.pm:357
STACK: Bio::GMOD::DB::Adapter::get_type
/usr/local/share/perl/5.10.0/Bio/GMOD/DB/Adapter.pm:4224
STACK: /usr/local/bin/gmod_bulk_load_gff3.pl:783
-----------------------------------------------------------
Issuing rollback() due to DESTROY without explicit disconnect() of
DBD::Pg::db handle dbname=chado;port=5432;host=localhost at
/usr/local/share/perl/5.10.0/Error.pm line 184.
I need your Help
thank you!
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