[Gmod-gbrowse] [Gmod-help] Re: [Gmod-schema] Error loading GFF3 file into chado

[Jason Stajich]

I also have these script jg_gff2gff3.pl in gff_tools of http://github.com/hyphaltip/genome-scripts/tree/master
and
gff3_to_JGIgff.pl for converting back into JGI gff from GFF3.

-jason

On Aug 14, 2009, at 11:01 AM, Don Gilbert wrote:

>
>> Has anyone out there written a JGI GFF2 to GFF3 parser
>
> I've written both ways: jgi to gff3, and gff3 to jgi-gff (which is a  
> variant of gff2).
> Find here
> http://wfleabase.org/release1/current_release/supplement/jgi_gff/
> as jgi2gff.pl  (and dpulex_gff2jgi.pl  for the other way)
>
> This script will want some revision for your data, and the variant  
> of JGI's gff
> I worked with may differ from yours.  Look at the sample at the top  
> of the
> script to see if it matches yours.
>
> - Don
>
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--
Jason Stajich
jason.stajich at gmail.com
jason at bioperl.org