[Gmod-gbrowse] [Gmod-help] Re: [Gmod-schema] Error loading GFF3 file into chado

[Don Gilbert]

> Has anyone out there written a JGI GFF2 to GFF3 parser

I've written both ways: jgi to gff3, and gff3 to jgi-gff (which is a variant of gff2).
Find here
http://wfleabase.org/release1/current_release/supplement/jgi_gff/
as jgi2gff.pl  (and dpulex_gff2jgi.pl  for the other way)

This script will want some revision for your data, and the variant of JGI's gff
I worked with may differ from yours.  Look at the sample at the top of the
script to see if it matches yours.

- Don