[Gmod-help] Re: [Gmod-gbrowse] can't view detailed view

[Scott Cain]

Hi Miquel,

This really shouldn't matter, but try adding "Name=X" to the list of
attributes for the X chromosome_arm line in the X gff and reload it.

Scott


2009/4/30 Miquel Ràmia <miquel.ramia at uab.cat>:
> I downloaded the files from
> ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff/
> (r5.16 was the current few weeks ago)
>
> Here are 2 screenshots, searching both by crhomosome name, the YHet
> looks good, and the X shows the "match" screen, any click in the results
> (only one in this case) always returns the "match" screen
>
>
>
>
> El dc 29 de 04 del 2009 a les 11:46 -0700, en/na Dave Clements, GMOD
> Help Desk va escriure:
>> Hi Miquel,
>>
>> Can you send screenshots of what it looks like when it working and
>> when it isn't?
>>
>> Also are the GFF files from
>> ftp://ftp.flybase.net/releases/FB2009_04/dmel_r5.17/gff/ ?
>>
>> I don't have any explanation for this behavior, yet.
>>
>> Thanks,
>>
>> Dave C.
>>
>> Was this helpful?  Let us know at http://gmod.org/wiki/Help_Desk_Feedback
>>
>> Learn more about GMOD at SMBE & Arthropod Genomics:
>>  http://ccg.biology.uiowa.edu/smbe/symposia.php?action=view&sym_ID=27
>>  http://www.k-state.edu/agc/symp2009/seminar.html
>>
>>
>> 2009/4/27 Miquel Ràmia <miquel.ramia at uab.cat>
>> >
>> > Hi,
>> >
>> > I'm running Gbrowse 1.69 in a Linux CentOS. I'm trying to upload the
>> > D.melanogaster GFF data from flybase to a mysql database. And I have a
>> > problem: In some chromosomes , via searching landmark/region by name, I
>> > can view de detailed view and tracks, or an overview with the "more than
>> > 1.3 Mb not displayed" message; I zoom in and no problem.
>> >
>> > But with other chromosomes I can only see a "match" r with no zoom
>> > option and without detailed view or anything.
>> >
>> > I tried loading de GFFs chromsome by chromosome (in this order : YHet,
>> > U, X, 4, 3R ...). At first I could view the YHet and U details and
>> > tracks with no problem, but after loading X data I couldn't view U
>> > details but the YHet only. The same with all the chromosomes loaded into
>> > the database.
>> >
>> > Any idea ?
>> >
>> > Thank you!
>> >
>> > Miquel Ràmia
>> >
>> >
>> >
>> > ------------------------------------------------------------------------------
>> > Crystal Reports &#45; New Free Runtime and 30 Day Trial
>> > Check out the new simplified licensign option that enables unlimited
>> > royalty&#45;free distribution of the report engine for externally facing
>> > server and web deployment.
>> > http://p.sf.net/sfu/businessobjects
>> > _______________________________________________
>> > Gmod-gbrowse mailing list
>> > Gmod-gbrowse at lists.sourceforge.net
>> > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>



-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research