[Feedback] Site Feedback: Typos in BioPax3 Oryza_sativa.owl

feedback at gramene.org feedback at gramene.org
Wed May 29 12:33:00 EDT 2019


URL         : No referrer

Subject     : Typos in BioPax3 Oryza_sativa.owl

Name        : Joanna

Email       : joanna at generalbioinformatics.com

Organization: General Bioinformatics

Comments    : Hello, 
We are parsing the above file and as part of internal qc we compare Uniprot ids to the reg exp from identifiers.org (miriam repo). It high-lighted some ids that didn't match the regex and after further investigation we found that the 0 (zero) had been replaced in your data with a O (uppercase o). We have 2 ids that this occurred in (but if it did not break the regex then we may have more erroneous identifiers that are silently broken). We are concerned that it could happen more throughout the file in other areas that we do not qc.  Please can you investigate? 
The 2 example ids to get you started are: Q6EUNO(0) and PODKK6 (P0DKK6).

The regex pattern that we use is found here:
https://www.ebi.ac.uk/miriam/main/datatypes/MIR:00000005
Many thanks

http://www.warelab.org/bugs/view.php?id=5841


More information about the Feedback mailing list