[Feedback] Site Feedback: BLAST tools are having issues

[feedback at gramene.org]

URL         : http://ensembl.gramene.org/Zea_mays/Tools/Blast/Results?db=otherfeatures;tl=G0omTAF1dcBAZbCG-168592

Subject     : Site Feedback: BLAST tools are having issues

Name        : Andrew F Bowerman

Email       : andrew.bowerman at anu.edu.au

Organization: The Australian National University

Comments    : 

AJAX error - Runtime Error in component "EnsEMBL::Web::Component::Tools::Blast::ResultsTable [content]"

Function EnsEMBL::Web::Component::Tools::Blast::ResultsTable fails to execute due to the following error:

	Can't call method "isa" on an undefined value at
	... /usr/local/ensembl-live/public-plugins/tools/modules/EnsEMBL/Web/Object/Blast.pm line 322.
      
AJAX error - Runtime Error in component "EnsEMBL::Web::Component::Tools::Blast::Karyotype [content]"

Function EnsEMBL::Web::Component::Tools::Blast::Karyotype fails to execute due to the following error:


	-------------------- EXCEPTION --------------------
	MSG: Attribute start was not a number. Expected an Integer
	STACK Bio::EnsEMBL::Utils::Scalar::assert_integer_pp
	... /usr/local/ensembl-live/ensembl/modules/Bio/EnsEMBL/Utils/Scalar.pm:566
	STACK Bio::EnsEMBL::DBSQL::SliceAdaptor::fetch_by_region
	... /usr/local/ensembl-live/ensembl/modules/Bio/EnsEMBL/DBSQL/SliceAdaptor.pm:210
	STACK EnsEMBL::Web::Object::Blast::map_result_hits_to_karyotype
	... /usr/local/ensembl-live/public-plugins/tools/modules/EnsEMBL/Web/Object/Blast.pm:230
	STACK EnsEMBL::Web::Component::Tools::Blast::Karyotype::get_hit_pointers
	... /usr/local/ensembl-live/public-plugins/tools/modules/EnsEMBL/Web/Component/Tools/Blast/Karyotype.pm:71
	STACK EnsEMBL::Web::Component::Tools::Blast::Karyotype::content
	... /usr/local/ensembl-live/public-plugins/tools/modules/EnsEMBL/Web/Component/Tools/Blast/Karyotype.pm:47
	STACK EnsEMBL::Web::Component::get_content
	... /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Component.pm:242
	STACK (eval) /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Document/Panel.pm:436
	STACK EnsEMBL::Web::Document::Panel::component_content
	... /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Document/Panel.pm:433
	STACK EnsEMBL::Web::Document::Panel::Ajax::content
	... /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Document/Panel/Ajax.pm:26
	STACK EnsEMBL::Web::Document::Element::Content::content
	... /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Document/Element/Content.pm:142
	STACK EnsEMBL::Web::Controller::render_page
	... /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Controller.pm:453
	STACK EnsEMBL::Web::Controller::Component::init
	... /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Controller/Component.pm:62
	STACK EnsEMBL::Web::Controller::process
	... /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Controller.pm:109
	STACK EnsEMBL::Web::Apache::SpeciesHandler::__ANON__
	... /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Apache/SpeciesHandler.pm:102
	STACK (eval) /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Exceptions.pm:70
	STACK EnsEMBL::Web::Exceptions::try
	... /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Exceptions.pm:70
	STACK EnsEMBL::Web::Apache::SpeciesHandler::handler
	... /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Apache/SpeciesHandler.pm:106
	STACK EnsEMBL::Web::Apache::Handlers::__ANON__
	... /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Apache/Handlers.pm:399
	STACK (eval) /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Exceptions.pm:70
	STACK EnsEMBL::Web::Exceptions::try
	... /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Exceptions.pm:70
	STACK EnsEMBL::Web::Apache::Handlers::handler
	... /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Apache/Handlers.pm:403
	STACK (eval) -e:0
	STACK toplevel -e:0
	Date (localtime)    = Tue May 16 23:23:35 2017
	Ensembl API version = 86
	---------------------------------------------------

http://www.warelab.org/bugs/view.php?id=5616