[Feedback] Site Feedback: assembly converter returning strange conversions

[feedback at gramene.org]

URL         : http://ensembl.gramene.org/Zea_mays/Tools/AssemblyConverter?db=core

Subject     : Site Feedback: assembly converter returning strange conversions

Name        : Mary Galli

Email       : marygalli at waksman.rutgers.edu

Organization: Waksman Institute

Comments    : 

Hello,
your assembly converter for maize v4 to v3 is returning unexpected results. It seems to be breaking up a region into many small pieces.
For example, if I input the following:
input
8	70204900 	70207600
1	100219900	100220700
5	5036900	        5042200
5	190287100	190290400
9	141172200	141173200

I get this as output (note the end of the first and the start of the second column values are actually contiguous in many cases)
8	68646061	        68647714
8	68647714 	68647822
8	68647822	        68647957
8	68647957  	68648001
8	68648035	        68648166
8	68648167	        68648510
8	68648510  	68648773
1	97885187 	97885987
5	4908541	        4911644
5	185675840	185679140
9	138838856	138839856

If there a way to avoid this or is there something wrong?

http://www.warelab.org/bugs/view.php?id=5615