[Feedback] Site Feedback: Redundant Biomart output
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feedback at gramene.org
Tue Oct 27 07:10:55 EDT 2015
URL : http://ensembl.gramene.org/biomart/martview/de9e5c4a6396d68b25756c5f1b408d34/de9e5c4a6396d68b25756c5f1b408d34
Subject : Site Feedback: Redundant Biomart output
Name : Josh Stein
Email : steinj at cshl.edu
Organization: CSHL
Comments :
Hi, I am getting identical lines in the resulting table after choosing gene stable id, GO, and InterPro attributes, which I have not seen previously. I am aware that asking for multiple attributes results in a combinatorial display of each GO term with each InterPro domain, but I have never before seen complete redundancy in all fields across a row, such as:
Gene stable ID GO term accession InterPro ID
GRMZM2G052619 GO:0016021 IPR008803
GRMZM2G052619 GO:0016021 IPR008803
GRMZM2G052619 GO:0016021 IPR008803
GRMZM2G052619 GO:0016021 IPR027417
GRMZM2G052619 GO:0016021 IPR027417
GRMZM2G052619 GO:0016021 IPR027417
GRMZM2G052619 GO:0016021 IPR030386
GRMZM2G052619 GO:0005525 IPR008803
GRMZM2G052619 GO:0005525 IPR008803
GRMZM2G052619 GO:0005525 IPR008803
GRMZM2G052619 GO:0005525 IPR027417
GRMZM2G052619 GO:0005525 IPR027417
GRMZM2G052619 GO:0005525 IPR027417
GRMZM2G052619 GO:0005525 IPR030386
GRMZM2G052619 GO:0016787 IPR008803
GRMZM2G052619 GO:0016787 IPR008803
GRMZM2G052619 GO:0016787 IPR008803
GRMZM2G052619 GO:0016787 IPR027417
Josh
http://www.warelab.org/bugs/view.php?id=5280
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