[Feedback] Site Feedback: Wheat genome dbs

[Marcela K. Monaco]

Dear Nelzo,

I would probably use the "genome" one, but you may want to read the
description for content of each file in the accompanying README:

ftp://ftp.gramene.org/pub/gramene/release44/data/fasta/triticum_aestivum/dna/README

Best,

Marcela

On Thu, Jan 29, 2015 at 7:34 AM, feedback at gramene.org <feedback at gramene.org>
wrote:

> URL         : http://ensembl.gramene.org/info/website/index.html
>
> Subject     : Site Feedback: Wheat genome dbs
>
> Name        : Nelzo Ereful
>
> Email       : nelzo.ereful at niab.com
>
> Organization: National Institute of Agricultural Botany
>
> Comments    :
>
> Hi,
>
> I have wheat reads sequenced using Illumina and i am planning to align
> this against the wheat genome (T.aestivum).
> Which whole-genome database is the best to align this -
>
> genome (Triticum_aestivum.IWGSC2.25.dna.genome.fa.gz)
> toplevel (Triticum_aestivum.IWGSC2.25.dna.toplevel.fa.gz)
> rm-genome (Triticum_aestivum.IWGSC2.25.dna_rm.genome.fa.gz)
> rm-toplevel (Triticum_aestivum.IWGSC2.25.dna_rm.toplevel.fa.gz
> sm-genome (Triticum_aestivum.IWGSC2.25.dna_sm.genome.fa.gz)
> sm-toplevel (Triticum_aestivum.IWGSC2.25.dna_sm.toplevel.fa.gz)
>
> Thanks,
>
> http://www.warelab.org/bugs/view.php?id=5110
>
>
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