<div dir="ltr"><div><div><div>Dear Nelzo,<br><br></div>I would probably use the "genome" one, but you may want to read the description for content of each file in the accompanying README:<br></div><br><a href="ftp://ftp.gramene.org/pub/gramene/release44/data/fasta/triticum_aestivum/dna/README">ftp://ftp.gramene.org/pub/gramene/release44/data/fasta/triticum_aestivum/dna/README</a><br><br></div><div>Best,<br><br>Marcela<br></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Jan 29, 2015 at 7:34 AM, <a href="mailto:feedback@gramene.org">feedback@gramene.org</a> <span dir="ltr"><<a href="mailto:feedback@gramene.org" target="_blank">feedback@gramene.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">URL : <a href="http://ensembl.gramene.org/info/website/index.html" target="_blank">http://ensembl.gramene.org/info/website/index.html</a><br>
<br>
Subject : Site Feedback: Wheat genome dbs<br>
<br>
Name : Nelzo Ereful<br>
<br>
Email : <a href="mailto:nelzo.ereful@niab.com">nelzo.ereful@niab.com</a><br>
<br>
Organization: National Institute of Agricultural Botany<br>
<br>
Comments :<br>
<br>
Hi,<br>
<br>
I have wheat reads sequenced using Illumina and i am planning to align this against the wheat genome (T.aestivum).<br>
Which whole-genome database is the best to align this -<br>
<br>
genome (Triticum_aestivum.IWGSC2.25.dna.genome.fa.gz)<br>
toplevel (Triticum_aestivum.IWGSC2.25.dna.toplevel.fa.gz)<br>
rm-genome (Triticum_aestivum.IWGSC2.25.dna_rm.genome.fa.gz)<br>
rm-toplevel (Triticum_aestivum.IWGSC2.25.dna_rm.toplevel.fa.gz<br>
sm-genome (Triticum_aestivum.IWGSC2.25.dna_sm.genome.fa.gz)<br>
sm-toplevel (Triticum_aestivum.IWGSC2.25.dna_sm.toplevel.fa.gz)<br>
<br>
Thanks,<br>
<br>
<a href="http://www.warelab.org/bugs/view.php?id=5110" target="_blank">http://www.warelab.org/bugs/view.php?id=5110</a><br>
<br>
<br>
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