[Feedback] Site Feedback: Citation of Gramene Zea mays Assembly and Gene Annotation

[Marcela K. Monaco]

Dear Ashley,

Thanks for contacting us.  Looks like we are reading our citing
instructions from http://www.gramene.org/cite
It is important to specify the build that you use of the Gramene database,
as this will have a specific set of sequenced genome references and gene
annotations build.  You may find this number as the first item of our left
Navigation menu bar in the home page.  This will be the number inside the
parenthesis for the current release notes (that is 46 currently): "Current
release notes (46)"
If you click on this link, you will see what maize reference sequence
assembly and gene build were used in release 46 (see the Genomes core table
in http://www.gramene.org/release-notes-46).  Past releases' notes are
available from the following link:

http://www.gramene.org/release-notes

Hope this is clear :)

Marcela

On Tue, Aug 4, 2015 at 1:41 AM, feedback at gramene.org <feedback at gramene.org>
wrote:

> URL         : http://www.gramene.org/
>
> Subject     : Site Feedback: Citation of Gramene Zea mays Assembly and
> Gene Annotation
>
> Name        : Ashley Lough
>
> Email       : alough at centralmethodist.edu
>
> Organization: Central Methodist University
>
> Comments    :
>
> Hello,
>
> My name is Dr. Ashley Lough and I am an Assistant Professor of Biology at
> Central Methodist University.  I have used Gramene in my sequence analysis
> and need to cite Gramene in my manuscript, but I'm not clear on how to find
> "the version of Gramene being used (identified on the Home page)" (quote
> from instructions on how to cite Gramene).  I used Gramene on 7/28/15 to
> collect nucleotide and protein sequences of Zea mays gene models.  I
> started at the website:  http://ensembl.gramene.org/Zea_mays/Info/Index.
> I found that the database version for Zea mays was 80.6, is that what you
> are talking about in a citation?
>
> Thanks for you help!
>
> Best wishes,
> Ashley
>
> http://www.warelab.org/bugs/view.php?id=5248
>
>
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>
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