<div dir="ltr"><div><div><div><div><div>Dear Ashley,<br><br></div>Thanks for contacting us. Looks like we are reading our citing instructions from <a href="http://www.gramene.org/cite">http://www.gramene.org/cite</a><br></div>It is important to specify the build that you use of the Gramene database, as this will have a specific set of sequenced genome references and gene annotations build. You may find this number as the first item of our left Navigation menu bar in the home page. This will be the number inside the parenthesis for the current release notes (that is 46 currently): "Current release notes (46)"<br></div>If you click on this link, you will see what maize reference sequence assembly and gene build were used in release 46 (see the Genomes core table in <a href="http://www.gramene.org/release-notes-46">http://www.gramene.org/release-notes-46</a>). Past releases' notes are available from the following link:<br><br><a href="http://www.gramene.org/release-notes">http://www.gramene.org/release-notes</a><br><br></div>Hope this is clear :)<br><br></div>Marcela<br></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Aug 4, 2015 at 1:41 AM, <a href="mailto:feedback@gramene.org">feedback@gramene.org</a> <span dir="ltr"><<a href="mailto:feedback@gramene.org" target="_blank">feedback@gramene.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">URL : <a href="http://www.gramene.org/" rel="noreferrer" target="_blank">http://www.gramene.org/</a><br>
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Subject : Site Feedback: Citation of Gramene Zea mays Assembly and Gene Annotation<br>
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Name : Ashley Lough<br>
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Email : <a href="mailto:alough@centralmethodist.edu">alough@centralmethodist.edu</a><br>
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Organization: Central Methodist University<br>
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Comments :<br>
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Hello,<br>
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My name is Dr. Ashley Lough and I am an Assistant Professor of Biology at Central Methodist University. I have used Gramene in my sequence analysis and need to cite Gramene in my manuscript, but I'm not clear on how to find "the version of Gramene being used (identified on the Home page)" (quote from instructions on how to cite Gramene). I used Gramene on 7/28/15 to collect nucleotide and protein sequences of Zea mays gene models. I started at the website: <a href="http://ensembl.gramene.org/Zea_mays/Info/Index" rel="noreferrer" target="_blank">http://ensembl.gramene.org/Zea_mays/Info/Index</a>. I found that the database version for Zea mays was 80.6, is that what you are talking about in a citation?<br>
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Thanks for you help!<br>
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Best wishes,<br>
Ashley<br>
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<a href="http://www.warelab.org/bugs/view.php?id=5248" rel="noreferrer" target="_blank">http://www.warelab.org/bugs/view.php?id=5248</a><br>
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