[Feedback] Site Feedback: How to get gene name in maize

[Marcela K. Monaco]

Hi Shanshan,

Sorry that the common gene names are not available in the Gramene Mart.
Try selecting the "Gene Description" column, which might include the common
name for a gene (for your example, you will get "Regulatory protein
opaque-2 [Source:UniProtKB/Swiss-Prot;Acc:P12959]").  Hope this helps until
we have successfully integrated all external references available for maize
gene IDs.

Thanks,

Marcela



==
Marcela Karey Monaco, PhD
Gramene Project Coordinator
Cold Spring Harbor Laboratory
One Bungtown Road, Williams #5
Cold Spring Harbor, NY 11724
Phone: 516-367-8808
Fax: 516-367-6851


On Sun, May 11, 2014 at 11:41 PM, feedback at gramene.org <feedback at gramene.org
> wrote:

> URL         :
> http://ensembl.gramene.org/biomart/martview/fea5124b64b2510a3ce5efb5df3ae5e7/fea5124b64b2510a3ce5efb5df3ae5e7
>
> Subject     : Site Feedback: How to get gene name in maize
>
> Name        : Shanshan Zhang
>
> Email       : sszhang3 at email.arizona.edu
>
> Organization: The University of Arizona
>
> Comments    :
>
> Hi Gramene, I tried to get gene names for a list of maize genes using
> gramene biomart. However, gene name column is empty even for some known
> genes. For example, I search gene id GRMZM2G015534 directly in
> gramene-genome-maize. I got the gene name is opaque-2 which is generally
> used in the publications. However, when I used the same gene id to filter
> in gramene-biomart and selected 'gene name' in abbributes, the gene name is
> empty for this gene id. Could you give me some suggestion? I try to get all
> published maize gene name for maize gene id. Thanks!
>
>
> http://www.warelab.org/bugs/view.php?id=4937
>
>
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