[Feedback] [Website feedback] MSU Version 6.0

[Marcela K. Monaco]

Hello Manuel,

MSU6 sequence in fasta, gene annotations, etc is available in Gramene's
release 38 FTP directory, see for example

ftp://ftp.gramene.org/pub/gramene/archives/PAST_RELEASES/release38/data/fasta/oryza_sativa/dna/

The same fasta sequence for IRGSP1 is available from the current release 40
at
ftp://ftp.gramene.org/pub/gramene/CURRENT_RELEASE/data/fasta/oryza_sativa/dna/

Unfortunately, we do not offer a browser with previous assemblies.

Hope this is useful,

Marcela

==
Marcela Karey Monaco, PhD
Gramene Project Coordinator
Cold Spring Harbor Laboratory
One Bungtown Road, Williams #5
Cold Spring Harbor, NY 11724
Phone: 516-367-8808
Fax: 516-367-6851


On Fri, Mar 28, 2014 at 3:05 PM, mesgue1 at tigers.lsu.edu <
mesgue1 at tigers.lsu.edu> wrote:

> Manuel Esguerra (mesgue1 at tigers.lsu.edu) sent a message using the contact
> form at http://www.gramene.org/contact.
>
> To the administrator,
>
> I am currently designing primers for our experiments and have noticed that
> there were great discrepancies on the position of the SNPs that were
> identified by our group to the current version of gramene rice sequence.
> Our
> SNPs were obtained by comparing our selected varieties using MSU version
> 6.0.
> May I ask if there's a way for me to access this version online? or is the
> old Gramene sequence for rice is still available? for me not be confused.
>
> Thanks
>
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>
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