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<title>Logback Log Messages</title>
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<p>Log session start time Tue Jul 16 17:21:44 MST 2019</p><p></p>
<table cellspacing="0">
<tr class="header">
<td class="Date">Date</td>
<td class="Thread">Thread</td>
<td class="Level">Level</td>
<td class="Logger">Logger</td>
<td class="MDC">MDC</td>
<td class="Message">Message</td>
</tr>
<tr class="error even">
<td class="Date">2019-07-16 12:28:44,753</td>
<td class="Thread">http-bio-8080-exec-343</td>
<td class="Level">ERROR</td>
<td class="Logger">errorLogger</td>
<td class="MDC"></td>
<td class="Message">An unspecified exception was caught for request: http://localhost:8080/ContentService/data/orthology/R-OSA-8933811/species/9230191</td>
</tr>
<tr><td class="Exception" colspan="6">java.util.NoSuchElementException: null
<br /> at java.util.ArrayList$Itr.next(ArrayList.java:862)
<br /> at org.reactome.server.service.controller.graph.OrthologyController.getOrthology(OrthologyController.java:49)
<br /> at org.reactome.server.service.controller.graph.OrthologyController$$FastClassBySpringCGLIB$$b02b34ff.invoke(<generated>)
<br /> at org.springframework.cglib.proxy.MethodProxy.invoke(MethodProxy.java:204)
<br /> at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.invokeJoinpoint(CglibAopProxy.java:738)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
<br /> at org.springframework.aop.framework.adapter.AfterReturningAdviceInterceptor.invoke(AfterReturningAdviceInterceptor.java:52)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.CglibAopProxy$DynamicAdvisedInterceptor.intercept(CglibAopProxy.java:673)
<br /> at org.reactome.server.service.controller.graph.OrthologyController$$EnhancerBySpringCGLIB$$9ec6585f.getOrthology(<generated>)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:205)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:133)
<br /> at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:97)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:827)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:738)
<br /> at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)
<br /> at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:967)
<br /> at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:901)
<br /> at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:970)
<br /> at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:861)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:624)
<br /> at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:846)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:197)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.reactome.server.service.utils.CustomRequestFilter.doFilterInternal(CustomRequestFilter.java:30)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:221)
<br /> at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
<br /> at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505)
<br /> at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:169)
<br /> at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
<br /> at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:956)
<br /> at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
<br /> at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:436)
<br /> at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1078)
<br /> at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:625)
<br /> at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
<br /> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
<br /> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
<br /> at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
<br /> at java.lang.Thread.run(Thread.java:748)
</td></tr>
<tr class="error odd">
<td class="Date">2019-07-16 12:30:05,767</td>
<td class="Thread">http-bio-8080-exec-344</td>
<td class="Level">ERROR</td>
<td class="Logger">errorLogger</td>
<td class="MDC"></td>
<td class="Message">An unspecified exception was caught for request: http://localhost:8080/ContentService/data/orthology/R-OSA-1119289/species/9230191</td>
</tr>
<tr><td class="Exception" colspan="6">java.util.NoSuchElementException: null
<br /> at java.util.ArrayList$Itr.next(ArrayList.java:862)
<br /> at org.reactome.server.service.controller.graph.OrthologyController.getOrthology(OrthologyController.java:49)
<br /> at org.reactome.server.service.controller.graph.OrthologyController$$FastClassBySpringCGLIB$$b02b34ff.invoke(<generated>)
<br /> at org.springframework.cglib.proxy.MethodProxy.invoke(MethodProxy.java:204)
<br /> at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.invokeJoinpoint(CglibAopProxy.java:738)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
<br /> at org.springframework.aop.framework.adapter.AfterReturningAdviceInterceptor.invoke(AfterReturningAdviceInterceptor.java:52)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.CglibAopProxy$DynamicAdvisedInterceptor.intercept(CglibAopProxy.java:673)
<br /> at org.reactome.server.service.controller.graph.OrthologyController$$EnhancerBySpringCGLIB$$9ec6585f.getOrthology(<generated>)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:205)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:133)
<br /> at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:97)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:827)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:738)
<br /> at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)
<br /> at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:967)
<br /> at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:901)
<br /> at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:970)
<br /> at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:861)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:624)
<br /> at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:846)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:197)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.reactome.server.service.utils.CustomRequestFilter.doFilterInternal(CustomRequestFilter.java:30)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:221)
<br /> at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
<br /> at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505)
<br /> at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:169)
<br /> at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
<br /> at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:956)
<br /> at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
<br /> at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:436)
<br /> at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1078)
<br /> at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:625)
<br /> at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
<br /> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
<br /> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
<br /> at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
<br /> at java.lang.Thread.run(Thread.java:748)
</td></tr></table>
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