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<title>Logback Log Messages</title>
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<p>Log session start time Wed Nov 01 09:52:34 EDT 2017</p><p></p>
<table cellspacing="0">
<tr class="header">
<td class="Date">Date</td>
<td class="Thread">Thread</td>
<td class="Level">Level</td>
<td class="Logger">Logger</td>
<td class="MDC">MDC</td>
<td class="Message">Message</td>
</tr>
<tr class="error even">
<td class="Date">2017-10-31 16:47:05,427</td>
<td class="Thread">http-bio-8080-exec-22</td>
<td class="Level">ERROR</td>
<td class="Logger">errorLogger</td>
<td class="MDC"></td>
<td class="Message">An unspecified exception was caught for request: http://localhost:8080/ContentService/data/pathways/low/entity/R-OSA-8932729</td>
</tr>
<tr><td class="Exception" colspan="6">org.neo4j.ogm.drivers.http.request.HttpRequestException: http://neo4j:react-app-user_pw@localhost:7474/db/data/transaction/commit: Connect to localhost:7474 [localhost/127.0.0.1] failed: Connection refused (Connection refused)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:228)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.executeRequest(HttpRequest.java:168)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:129)
<br /> at org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:98)
<br /> at org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:78)
<br /> at org.neo4j.ogm.session.Neo4jSession.query(Neo4jSession.java:368)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy218.query(Unknown Source)
<br /> at org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery$1.apply(QueryResultGraphRepositoryQuery.java:69)
<br /> at org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery$1.apply(QueryResultGraphRepositoryQuery.java:64)
<br /> at org.neo4j.ogm.session.delegates.TransactionsDelegate.doInTransaction(TransactionsDelegate.java:58)
<br /> at org.neo4j.ogm.session.Neo4jSession.doInTransaction(Neo4jSession.java:446)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy218.doInTransaction(Unknown Source)
<br /> at org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery.mapToConcreteType(QueryResultGraphRepositoryQuery.java:64)
<br /> at org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery.execute(QueryResultGraphRepositoryQuery.java:52)
<br /> at org.springframework.data.neo4j.repository.query.GraphRepositoryQuery.execute(GraphRepositoryQuery.java:52)
<br /> at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.doInvoke(RepositoryFactorySupport.java:482)
<br /> at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:460)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.data.projection.DefaultMethodInvokingMethodInterceptor.invoke(DefaultMethodInvokingMethodInterceptor.java:61)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
<br /> at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
<br /> at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy242.getPathwaysForByStId(Unknown Source)
<br /> at org.reactome.server.graph.service.PathwaysService.getPathwaysFor_aroundBody2(PathwaysService.java:37)
<br /> at org.reactome.server.graph.service.PathwaysService.getPathwaysFor_aroundBody3$advice(PathwaysService.java:33)
<br /> at org.reactome.server.graph.service.PathwaysService.getPathwaysFor(PathwaysService.java:1)
<br /> at org.reactome.server.service.controller.graph.PathwaysController.getPathwaysFor(PathwaysController.java:95)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:222)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)
<br /> at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:814)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:737)
<br /> at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)
<br /> at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
<br /> at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
<br /> at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
<br /> at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:860)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:624)
<br /> at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.reactome.server.service.utils.CORSFilter.doFilterInternal(CORSFilter.java:28)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
<br /> at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
<br /> at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505)
<br /> at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
<br /> at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
<br /> at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
<br /> at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
<br /> at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:423)
<br /> at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1079)
<br /> at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:620)
<br /> at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:318)
<br /> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
<br /> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
<br /> at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
<br /> at java.lang.Thread.run(Thread.java:745)
<br />Caused by: org.apache.http.conn.HttpHostConnectException: Connect to localhost:7474 [localhost/127.0.0.1] failed: Connection refused (Connection refused)
<br /> at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:158)
<br /> at org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353)
<br /> at org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380)
<br /> at org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)
<br /> at org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184)
<br /> at org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88)
<br /> at org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)
<br /> at org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184)
<br /> at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)
<br /> at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:107)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:192)
<br /> ... 100 common frames omitted
<br />Caused by: java.net.ConnectException: Connection refused (Connection refused)
<br /> at java.net.PlainSocketImpl.socketConnect(Native Method)
<br /> at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
<br /> at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
<br /> at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
<br /> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
<br /> at java.net.Socket.connect(Socket.java:589)
<br /> at org.apache.http.conn.socket.PlainConnectionSocketFactory.connectSocket(PlainConnectionSocketFactory.java:74)
<br /> at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:141)
<br /> ... 110 common frames omitted
</td></tr>
<tr class="error odd">
<td class="Date">2017-10-31 16:47:13,835</td>
<td class="Thread">http-bio-8080-exec-2</td>
<td class="Level">ERROR</td>
<td class="Logger">errorLogger</td>
<td class="MDC"></td>
<td class="Message">An unspecified exception was caught for request: http://localhost:8080/ContentService/data/pathways/low/entity/R-OSA-8932729</td>
</tr>
<tr><td class="Exception" colspan="6">org.neo4j.ogm.drivers.http.request.HttpRequestException: http://neo4j:react-app-user_pw@localhost:7474/db/data/transaction/commit: Connect to localhost:7474 [localhost/127.0.0.1] failed: Connection refused (Connection refused)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:228)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.executeRequest(HttpRequest.java:168)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:129)
<br /> at org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:98)
<br /> at org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:78)
<br /> at org.neo4j.ogm.session.Neo4jSession.query(Neo4jSession.java:368)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy218.query(Unknown Source)
<br /> at org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery$1.apply(QueryResultGraphRepositoryQuery.java:69)
<br /> at org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery$1.apply(QueryResultGraphRepositoryQuery.java:64)
<br /> at org.neo4j.ogm.session.delegates.TransactionsDelegate.doInTransaction(TransactionsDelegate.java:58)
<br /> at org.neo4j.ogm.session.Neo4jSession.doInTransaction(Neo4jSession.java:446)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy218.doInTransaction(Unknown Source)
<br /> at org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery.mapToConcreteType(QueryResultGraphRepositoryQuery.java:64)
<br /> at org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery.execute(QueryResultGraphRepositoryQuery.java:52)
<br /> at org.springframework.data.neo4j.repository.query.GraphRepositoryQuery.execute(GraphRepositoryQuery.java:52)
<br /> at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.doInvoke(RepositoryFactorySupport.java:482)
<br /> at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:460)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.data.projection.DefaultMethodInvokingMethodInterceptor.invoke(DefaultMethodInvokingMethodInterceptor.java:61)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
<br /> at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
<br /> at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy242.getPathwaysForByStId(Unknown Source)
<br /> at org.reactome.server.graph.service.PathwaysService.getPathwaysFor_aroundBody2(PathwaysService.java:37)
<br /> at org.reactome.server.graph.service.PathwaysService.getPathwaysFor_aroundBody3$advice(PathwaysService.java:33)
<br /> at org.reactome.server.graph.service.PathwaysService.getPathwaysFor(PathwaysService.java:1)
<br /> at org.reactome.server.service.controller.graph.PathwaysController.getPathwaysFor(PathwaysController.java:95)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:222)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)
<br /> at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:814)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:737)
<br /> at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)
<br /> at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
<br /> at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
<br /> at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
<br /> at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:860)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:624)
<br /> at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.reactome.server.service.utils.CORSFilter.doFilterInternal(CORSFilter.java:28)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
<br /> at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
<br /> at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505)
<br /> at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
<br /> at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
<br /> at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
<br /> at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
<br /> at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:423)
<br /> at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1079)
<br /> at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:620)
<br /> at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
<br /> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
<br /> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
<br /> at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
<br /> at java.lang.Thread.run(Thread.java:745)
<br />Caused by: org.apache.http.conn.HttpHostConnectException: Connect to localhost:7474 [localhost/127.0.0.1] failed: Connection refused (Connection refused)
<br /> at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:158)
<br /> at org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353)
<br /> at org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380)
<br /> at org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)
<br /> at org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184)
<br /> at org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88)
<br /> at org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)
<br /> at org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184)
<br /> at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)
<br /> at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:107)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:192)
<br /> ... 100 common frames omitted
<br />Caused by: java.net.ConnectException: Connection refused (Connection refused)
<br /> at java.net.PlainSocketImpl.socketConnect(Native Method)
<br /> at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
<br /> at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
<br /> at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
<br /> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
<br /> at java.net.Socket.connect(Socket.java:589)
<br /> at org.apache.http.conn.socket.PlainConnectionSocketFactory.connectSocket(PlainConnectionSocketFactory.java:74)
<br /> at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:141)
<br /> ... 110 common frames omitted
</td></tr>
<tr class="error even">
<td class="Date">2017-10-31 16:47:14,607</td>
<td class="Thread">http-bio-8080-exec-23</td>
<td class="Level">ERROR</td>
<td class="Logger">errorLogger</td>
<td class="MDC"></td>
<td class="Message">An unspecified exception was caught for request: http://localhost:8080/ContentService/data/pathways/low/entity/R-ALL-353113</td>
</tr>
<tr><td class="Exception" colspan="6">org.neo4j.ogm.drivers.http.request.HttpRequestException: http://neo4j:react-app-user_pw@localhost:7474/db/data/transaction/commit: Connect to localhost:7474 [localhost/127.0.0.1] failed: Connection refused (Connection refused)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:228)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.executeRequest(HttpRequest.java:168)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:129)
<br /> at org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:98)
<br /> at org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:78)
<br /> at org.neo4j.ogm.session.Neo4jSession.query(Neo4jSession.java:368)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy218.query(Unknown Source)
<br /> at org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery$1.apply(QueryResultGraphRepositoryQuery.java:69)
<br /> at org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery$1.apply(QueryResultGraphRepositoryQuery.java:64)
<br /> at org.neo4j.ogm.session.delegates.TransactionsDelegate.doInTransaction(TransactionsDelegate.java:58)
<br /> at org.neo4j.ogm.session.Neo4jSession.doInTransaction(Neo4jSession.java:446)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy218.doInTransaction(Unknown Source)
<br /> at org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery.mapToConcreteType(QueryResultGraphRepositoryQuery.java:64)
<br /> at org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery.execute(QueryResultGraphRepositoryQuery.java:52)
<br /> at org.springframework.data.neo4j.repository.query.GraphRepositoryQuery.execute(GraphRepositoryQuery.java:52)
<br /> at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.doInvoke(RepositoryFactorySupport.java:482)
<br /> at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:460)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.data.projection.DefaultMethodInvokingMethodInterceptor.invoke(DefaultMethodInvokingMethodInterceptor.java:61)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
<br /> at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
<br /> at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy242.getPathwaysForByStId(Unknown Source)
<br /> at org.reactome.server.graph.service.PathwaysService.getPathwaysFor_aroundBody2(PathwaysService.java:37)
<br /> at org.reactome.server.graph.service.PathwaysService.getPathwaysFor_aroundBody3$advice(PathwaysService.java:33)
<br /> at org.reactome.server.graph.service.PathwaysService.getPathwaysFor(PathwaysService.java:1)
<br /> at org.reactome.server.service.controller.graph.PathwaysController.getPathwaysFor(PathwaysController.java:95)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:222)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)
<br /> at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:814)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:737)
<br /> at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)
<br /> at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
<br /> at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
<br /> at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
<br /> at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:860)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:624)
<br /> at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.reactome.server.service.utils.CORSFilter.doFilterInternal(CORSFilter.java:28)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
<br /> at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
<br /> at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505)
<br /> at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
<br /> at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
<br /> at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
<br /> at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
<br /> at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:423)
<br /> at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1079)
<br /> at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:620)
<br /> at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
<br /> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
<br /> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
<br /> at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
<br /> at java.lang.Thread.run(Thread.java:745)
<br />Caused by: org.apache.http.conn.HttpHostConnectException: Connect to localhost:7474 [localhost/127.0.0.1] failed: Connection refused (Connection refused)
<br /> at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:158)
<br /> at org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353)
<br /> at org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380)
<br /> at org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)
<br /> at org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184)
<br /> at org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88)
<br /> at org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)
<br /> at org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184)
<br /> at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)
<br /> at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:107)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:192)
<br /> ... 100 common frames omitted
<br />Caused by: java.net.ConnectException: Connection refused (Connection refused)
<br /> at java.net.PlainSocketImpl.socketConnect(Native Method)
<br /> at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
<br /> at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
<br /> at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
<br /> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
<br /> at java.net.Socket.connect(Socket.java:589)
<br /> at org.apache.http.conn.socket.PlainConnectionSocketFactory.connectSocket(PlainConnectionSocketFactory.java:74)
<br /> at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:141)
<br /> ... 110 common frames omitted
</td></tr>
<tr class="error odd">
<td class="Date">2017-11-01 03:26:37,686</td>
<td class="Thread">http-bio-8080-exec-45</td>
<td class="Level">ERROR</td>
<td class="Logger">errorLogger</td>
<td class="MDC"></td>
<td class="Message">An unspecified exception was caught for request: http://localhost:8080/ContentService/data/species/main</td>
</tr>
<tr><td class="Exception" colspan="6">org.neo4j.ogm.drivers.http.request.HttpRequestException: http://neo4j:react-app-user_pw@localhost:7474/db/data/transaction/commit: Connect to localhost:7474 [localhost/127.0.0.1] failed: Connection refused (Connection refused)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:228)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.executeRequest(HttpRequest.java:168)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:87)
<br /> at org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.executeAndMap(ExecuteQueriesDelegate.java:114)
<br /> at org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:87)
<br /> at org.neo4j.ogm.session.Neo4jSession.query(Neo4jSession.java:378)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy218.query(Unknown Source)
<br /> at org.springframework.data.neo4j.repository.query.GraphRepositoryQuery.execute(GraphRepositoryQuery.java:71)
<br /> at org.springframework.data.neo4j.repository.query.GraphRepositoryQuery.execute(GraphRepositoryQuery.java:52)
<br /> at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.doInvoke(RepositoryFactorySupport.java:482)
<br /> at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:460)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.data.projection.DefaultMethodInvokingMethodInterceptor.invoke(DefaultMethodInvokingMethodInterceptor.java:61)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
<br /> at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
<br /> at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy250.getSpecies(Unknown Source)
<br /> at org.reactome.server.graph.service.SpeciesService.getSpecies_aroundBody0(SpeciesService.java:20)
<br /> at org.reactome.server.graph.service.SpeciesService.getSpecies_aroundBody1$advice(SpeciesService.java:33)
<br /> at org.reactome.server.graph.service.SpeciesService.getSpecies(SpeciesService.java:1)
<br /> at org.reactome.server.service.controller.graph.SpeciesController.getSpecies(SpeciesController.java:44)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:222)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)
<br /> at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:814)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:737)
<br /> at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)
<br /> at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
<br /> at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
<br /> at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
<br /> at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:860)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:624)
<br /> at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.reactome.server.service.utils.CORSFilter.doFilterInternal(CORSFilter.java:28)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
<br /> at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
<br /> at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505)
<br /> at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
<br /> at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
<br /> at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
<br /> at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
<br /> at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:423)
<br /> at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1079)
<br /> at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:620)
<br /> at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
<br /> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
<br /> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
<br /> at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
<br /> at java.lang.Thread.run(Thread.java:745)
<br />Caused by: org.apache.http.conn.HttpHostConnectException: Connect to localhost:7474 [localhost/127.0.0.1] failed: Connection refused (Connection refused)
<br /> at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:158)
<br /> at org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353)
<br /> at org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380)
<br /> at org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)
<br /> at org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184)
<br /> at org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88)
<br /> at org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)
<br /> at org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184)
<br /> at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)
<br /> at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:107)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:192)
<br /> ... 83 common frames omitted
<br />Caused by: java.net.ConnectException: Connection refused (Connection refused)
<br /> at java.net.PlainSocketImpl.socketConnect(Native Method)
<br /> at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
<br /> at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
<br /> at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
<br /> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
<br /> at java.net.Socket.connect(Socket.java:589)
<br /> at org.apache.http.conn.socket.PlainConnectionSocketFactory.connectSocket(PlainConnectionSocketFactory.java:74)
<br /> at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:141)
<br /> ... 93 common frames omitted
</td></tr>
<tr class="error even">
<td class="Date">2017-11-01 09:52:21,992</td>
<td class="Thread">http-bio-8080-exec-67</td>
<td class="Level">ERROR</td>
<td class="Logger">errorLogger</td>
<td class="MDC"></td>
<td class="Message">An unspecified exception was caught for request: http://localhost:8080/ContentService/data/species/main</td>
</tr>
<tr><td class="Exception" colspan="6">org.neo4j.ogm.drivers.http.request.HttpRequestException: http://neo4j:react-app-user_pw@localhost:7474/db/data/transaction/commit: Connect to localhost:7474 [localhost/127.0.0.1] failed: Connection refused (Connection refused)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:228)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.executeRequest(HttpRequest.java:168)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:87)
<br /> at org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.executeAndMap(ExecuteQueriesDelegate.java:114)
<br /> at org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:87)
<br /> at org.neo4j.ogm.session.Neo4jSession.query(Neo4jSession.java:378)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy218.query(Unknown Source)
<br /> at org.springframework.data.neo4j.repository.query.GraphRepositoryQuery.execute(GraphRepositoryQuery.java:71)
<br /> at org.springframework.data.neo4j.repository.query.GraphRepositoryQuery.execute(GraphRepositoryQuery.java:52)
<br /> at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.doInvoke(RepositoryFactorySupport.java:482)
<br /> at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:460)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.data.projection.DefaultMethodInvokingMethodInterceptor.invoke(DefaultMethodInvokingMethodInterceptor.java:61)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
<br /> at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
<br /> at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy250.getSpecies(Unknown Source)
<br /> at org.reactome.server.graph.service.SpeciesService.getSpecies_aroundBody0(SpeciesService.java:20)
<br /> at org.reactome.server.graph.service.SpeciesService.getSpecies_aroundBody1$advice(SpeciesService.java:33)
<br /> at org.reactome.server.graph.service.SpeciesService.getSpecies(SpeciesService.java:1)
<br /> at org.reactome.server.service.controller.graph.SpeciesController.getSpecies(SpeciesController.java:44)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:222)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)
<br /> at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:814)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:737)
<br /> at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)
<br /> at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
<br /> at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
<br /> at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
<br /> at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:860)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:624)
<br /> at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.reactome.server.service.utils.CORSFilter.doFilterInternal(CORSFilter.java:28)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
<br /> at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
<br /> at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505)
<br /> at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
<br /> at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
<br /> at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
<br /> at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
<br /> at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:423)
<br /> at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1079)
<br /> at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:620)
<br /> at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
<br /> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
<br /> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
<br /> at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
<br /> at java.lang.Thread.run(Thread.java:745)
<br />Caused by: org.apache.http.conn.HttpHostConnectException: Connect to localhost:7474 [localhost/127.0.0.1] failed: Connection refused (Connection refused)
<br /> at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:158)
<br /> at org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353)
<br /> at org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380)
<br /> at org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)
<br /> at org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184)
<br /> at org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88)
<br /> at org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)
<br /> at org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184)
<br /> at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)
<br /> at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:107)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:192)
<br /> ... 83 common frames omitted
<br />Caused by: java.net.ConnectException: Connection refused (Connection refused)
<br /> at java.net.PlainSocketImpl.socketConnect(Native Method)
<br /> at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
<br /> at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
<br /> at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
<br /> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
<br /> at java.net.Socket.connect(Socket.java:589)
<br /> at org.apache.http.conn.socket.PlainConnectionSocketFactory.connectSocket(PlainConnectionSocketFactory.java:74)
<br /> at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:141)
<br /> ... 93 common frames omitted
</td></tr>
<tr class="error odd">
<td class="Date">2017-11-01 09:52:34,259</td>
<td class="Thread">http-bio-8080-exec-72</td>
<td class="Level">ERROR</td>
<td class="Logger">errorLogger</td>
<td class="MDC"></td>
<td class="Message">An unspecified exception was caught for request: http://localhost:8080/ContentService/data/species/main</td>
</tr>
<tr><td class="Exception" colspan="6">org.neo4j.ogm.drivers.http.request.HttpRequestException: http://neo4j:react-app-user_pw@localhost:7474/db/data/transaction/commit: Connect to localhost:7474 [localhost/127.0.0.1] failed: Connection refused (Connection refused)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:228)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.executeRequest(HttpRequest.java:168)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:87)
<br /> at org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.executeAndMap(ExecuteQueriesDelegate.java:114)
<br /> at org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:87)
<br /> at org.neo4j.ogm.session.Neo4jSession.query(Neo4jSession.java:378)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
<br /> at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy218.query(Unknown Source)
<br /> at org.springframework.data.neo4j.repository.query.GraphRepositoryQuery.execute(GraphRepositoryQuery.java:71)
<br /> at org.springframework.data.neo4j.repository.query.GraphRepositoryQuery.execute(GraphRepositoryQuery.java:52)
<br /> at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.doInvoke(RepositoryFactorySupport.java:482)
<br /> at org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:460)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.data.projection.DefaultMethodInvokingMethodInterceptor.invoke(DefaultMethodInvokingMethodInterceptor.java:61)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
<br /> at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
<br /> at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)
<br /> at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
<br /> at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
<br /> at com.sun.proxy.$Proxy250.getSpecies(Unknown Source)
<br /> at org.reactome.server.graph.service.SpeciesService.getSpecies_aroundBody0(SpeciesService.java:20)
<br /> at org.reactome.server.graph.service.SpeciesService.getSpecies_aroundBody1$advice(SpeciesService.java:33)
<br /> at org.reactome.server.graph.service.SpeciesService.getSpecies(SpeciesService.java:1)
<br /> at org.reactome.server.service.controller.graph.SpeciesController.getSpecies(SpeciesController.java:44)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
<br /> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
<br /> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
<br /> at java.lang.reflect.Method.invoke(Method.java:498)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:222)
<br /> at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)
<br /> at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:814)
<br /> at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:737)
<br /> at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)
<br /> at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)
<br /> at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)
<br /> at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)
<br /> at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:860)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:624)
<br /> at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)
<br /> at javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.reactome.server.service.utils.CORSFilter.doFilterInternal(CORSFilter.java:28)
<br /> at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)
<br /> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)
<br /> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)
<br /> at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)
<br /> at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)
<br /> at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505)
<br /> at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)
<br /> at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)
<br /> at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)
<br /> at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)
<br /> at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:423)
<br /> at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1079)
<br /> at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:620)
<br /> at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)
<br /> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
<br /> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
<br /> at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
<br /> at java.lang.Thread.run(Thread.java:745)
<br />Caused by: org.apache.http.conn.HttpHostConnectException: Connect to localhost:7474 [localhost/127.0.0.1] failed: Connection refused (Connection refused)
<br /> at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:158)
<br /> at org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353)
<br /> at org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380)
<br /> at org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)
<br /> at org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184)
<br /> at org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88)
<br /> at org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)
<br /> at org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184)
<br /> at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)
<br /> at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:107)
<br /> at org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:192)
<br /> ... 83 common frames omitted
<br />Caused by: java.net.ConnectException: Connection refused (Connection refused)
<br /> at java.net.PlainSocketImpl.socketConnect(Native Method)
<br /> at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
<br /> at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
<br /> at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
<br /> at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
<br /> at java.net.Socket.connect(Socket.java:589)
<br /> at org.apache.http.conn.socket.PlainConnectionSocketFactory.connectSocket(PlainConnectionSocketFactory.java:74)
<br /> at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:141)
<br /> ... 93 common frames omitted
</td></tr></table>
</body></html>