<html>
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<font face="Verdana">Fixed.<br>
<br>
Neo4j was down...likely server outage on Sunday. Investigating...<br>
<br>
- Justin<br>
</font><br>
<div class="moz-cite-prefix">On 11/01/2017 10:32 AM,
<a class="moz-txt-link-abbreviated" href="mailto:reactome-support@gramene.org">reactome-support@gramene.org</a> wrote:<br>
</div>
<blockquote
cite="mid:918489145.3.1509557542309@plantreactome.oicr.on.ca"
type="cite">
<title>Logback Log Messages</title>
<style type="text/css">
table { margin-left: 2em; margin-right: 2em; border-left: 2px solid #AAA; }
TR.even { background: #FFFFFF; }
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TD.Time, TD.Date { text-align: right; font-family: courier, monospace; font-size: smaller; }
TD.Thread { text-align: left; }
TD.Level { text-align: right; }
TD.Logger { text-align: left; }
TR.header { background: #596ED5; color: #FFF; font-weight: bold; font-size: larger; }
TD.Exception { background: #A2AEE8; font-family: courier, monospace;}
</style>
<hr>
<p>Log session start time Wed Nov 01 13:32:22 EDT 2017</p>
<table cellspacing="0">
<tbody>
<tr class="header">
<td class="Date">Date</td>
<td class="Thread">Thread</td>
<td class="Level">Level</td>
<td class="Logger">Logger</td>
<td class="MDC">MDC</td>
<td class="Message">Message</td>
</tr>
<tr class="error even">
<td class="Date">2017-11-01 12:13:20,133</td>
<td class="Thread">http-bio-8080-exec-105</td>
<td class="Level">ERROR</td>
<td class="Logger">errorLogger</td>
<td class="MDC"><br>
</td>
<td class="Message">An unspecified exception was caught for
request:
<a class="moz-txt-link-freetext" href="http://localhost:8080/ContentService/data/pathways/low/entity/R-OSA-1114672">http://localhost:8080/ContentService/data/pathways/low/entity/R-OSA-1114672</a></td>
</tr>
<tr>
<td class="Exception" colspan="6">org.neo4j.ogm.drivers.http.request.HttpRequestException:
<a class="moz-txt-link-freetext" href="http://neo4j:react-app-user_pw@localhost:7474/db/data/transaction/commit">http://neo4j:react-app-user_pw@localhost:7474/db/data/transaction/commit</a>:
Connect to localhost:7474 [localhost/127.0.0.1] failed:
Connection refused (Connection refused)
<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:228)<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.executeRequest(HttpRequest.java:168)<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:129)<br>
at
org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:98)<br>
at
org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:78)<br>
at
org.neo4j.ogm.session.Neo4jSession.query(Neo4jSession.java:368)
<br>
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
<br>
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)<br>
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:498)
<br>
at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)<br>
at com.sun.proxy.$Proxy218.query(Unknown Source)
<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery$1.apply(QueryResultGraphRepositoryQuery.java:69)<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery$1.apply(QueryResultGraphRepositoryQuery.java:64)<br>
at
org.neo4j.ogm.session.delegates.TransactionsDelegate.doInTransaction(TransactionsDelegate.java:58)<br>
at
org.neo4j.ogm.session.Neo4jSession.doInTransaction(Neo4jSession.java:446)<br>
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
<br>
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)<br>
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:498)
<br>
at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)<br>
at com.sun.proxy.$Proxy218.doInTransaction(Unknown
Source)
<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery.mapToConcreteType(QueryResultGraphRepositoryQuery.java:64)<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery.execute(QueryResultGraphRepositoryQuery.java:52)<br>
at
org.springframework.data.neo4j.repository.query.GraphRepositoryQuery.execute(GraphRepositoryQuery.java:52)<br>
at
org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.doInvoke(RepositoryFactorySupport.java:482)<br>
at
org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:460)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.data.projection.DefaultMethodInvokingMethodInterceptor.invoke(DefaultMethodInvokingMethodInterceptor.java:61)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)<br>
at
org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)<br>
at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)<br>
at
com.sun.proxy.$Proxy242.getPathwaysForByStId(Unknown
Source)
<br>
at
org.reactome.server.graph.service.PathwaysService.getPathwaysFor_aroundBody2(PathwaysService.java:37)<br>
at
org.reactome.server.graph.service.PathwaysService.getPathwaysFor_aroundBody3$advice(PathwaysService.java:33)<br>
at
org.reactome.server.graph.service.PathwaysService.getPathwaysFor(PathwaysService.java:1)<br>
at
org.reactome.server.service.controller.graph.PathwaysController.getPathwaysFor(PathwaysController.java:95)<br>
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
<br>
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)<br>
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:498)
<br>
at
org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:222)<br>
at
org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)<br>
at
org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110)<br>
at
org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:814)<br>
at
org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:737)<br>
at
org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)<br>
at
org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)<br>
at
org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)<br>
at
org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)<br>
at
org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:860)<br>
at
javax.servlet.http.HttpServlet.service(HttpServlet.java:624)
<br>
at
org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)<br>
at
javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)<br>
at
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.reactome.server.service.utils.CORSFilter.doFilterInternal(CORSFilter.java:28)<br>
at
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)<br>
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)<br>
at
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505)<br>
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)<br>
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)<br>
at
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)<br>
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)<br>
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:423)<br>
at
org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1079)<br>
at
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:620)<br>
at
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:318)<br>
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)<br>
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)<br>
at
org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)<br>
at java.lang.Thread.run(Thread.java:745)
<br>
Caused by: org.apache.http.conn.HttpHostConnectException:
Connect to localhost:7474 [localhost/127.0.0.1] failed:
Connection refused (Connection refused)
<br>
at
org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:158)<br>
at
org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353)<br>
at
org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380)<br>
at
org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)<br>
at
org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184)<br>
at
org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88)
<br>
at
org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)<br>
at
org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184)<br>
at
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)<br>
at
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:107)<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:192)<br>
... 100 common frames omitted
<br>
Caused by: java.net.ConnectException: Connection refused
(Connection refused)
<br>
at java.net.PlainSocketImpl.socketConnect(Native
Method)
<br>
at
java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)<br>
at
java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)<br>
at
java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)<br>
at
java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
<br>
at java.net.Socket.connect(Socket.java:589)
<br>
at
org.apache.http.conn.socket.PlainConnectionSocketFactory.connectSocket(PlainConnectionSocketFactory.java:74)<br>
at
org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:141)<br>
... 110 common frames omitted
</td>
</tr>
<tr class="error odd">
<td class="Date">2017-11-01 12:13:38,385</td>
<td class="Thread">http-bio-8080-exec-100</td>
<td class="Level">ERROR</td>
<td class="Logger">errorLogger</td>
<td class="MDC"><br>
</td>
<td class="Message">An unspecified exception was caught for
request:
<a class="moz-txt-link-freetext" href="http://localhost:8080/ContentService/data/pathways/low/entity/R-OSA-1114672">http://localhost:8080/ContentService/data/pathways/low/entity/R-OSA-1114672</a></td>
</tr>
<tr>
<td class="Exception" colspan="6">org.neo4j.ogm.drivers.http.request.HttpRequestException:
<a class="moz-txt-link-freetext" href="http://neo4j:react-app-user_pw@localhost:7474/db/data/transaction/commit">http://neo4j:react-app-user_pw@localhost:7474/db/data/transaction/commit</a>:
Connect to localhost:7474 [localhost/127.0.0.1] failed:
Connection refused (Connection refused)
<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:228)<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.executeRequest(HttpRequest.java:168)<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:129)<br>
at
org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:98)<br>
at
org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:78)<br>
at
org.neo4j.ogm.session.Neo4jSession.query(Neo4jSession.java:368)
<br>
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
<br>
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)<br>
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:498)
<br>
at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)<br>
at com.sun.proxy.$Proxy218.query(Unknown Source)
<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery$1.apply(QueryResultGraphRepositoryQuery.java:69)<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery$1.apply(QueryResultGraphRepositoryQuery.java:64)<br>
at
org.neo4j.ogm.session.delegates.TransactionsDelegate.doInTransaction(TransactionsDelegate.java:58)<br>
at
org.neo4j.ogm.session.Neo4jSession.doInTransaction(Neo4jSession.java:446)<br>
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
<br>
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)<br>
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:498)
<br>
at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)<br>
at com.sun.proxy.$Proxy218.doInTransaction(Unknown
Source)
<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery.mapToConcreteType(QueryResultGraphRepositoryQuery.java:64)<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery.execute(QueryResultGraphRepositoryQuery.java:52)<br>
at
org.springframework.data.neo4j.repository.query.GraphRepositoryQuery.execute(GraphRepositoryQuery.java:52)<br>
at
org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.doInvoke(RepositoryFactorySupport.java:482)<br>
at
org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:460)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.data.projection.DefaultMethodInvokingMethodInterceptor.invoke(DefaultMethodInvokingMethodInterceptor.java:61)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)<br>
at
org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)<br>
at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)<br>
at
com.sun.proxy.$Proxy242.getPathwaysForByStId(Unknown
Source)
<br>
at
org.reactome.server.graph.service.PathwaysService.getPathwaysFor_aroundBody2(PathwaysService.java:37)<br>
at
org.reactome.server.graph.service.PathwaysService.getPathwaysFor_aroundBody3$advice(PathwaysService.java:33)<br>
at
org.reactome.server.graph.service.PathwaysService.getPathwaysFor(PathwaysService.java:1)<br>
at
org.reactome.server.service.controller.graph.PathwaysController.getPathwaysFor(PathwaysController.java:95)<br>
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
<br>
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)<br>
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:498)
<br>
at
org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:222)<br>
at
org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)<br>
at
org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110)<br>
at
org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:814)<br>
at
org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:737)<br>
at
org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)<br>
at
org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)<br>
at
org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)<br>
at
org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)<br>
at
org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:860)<br>
at
javax.servlet.http.HttpServlet.service(HttpServlet.java:624)
<br>
at
org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)<br>
at
javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)<br>
at
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.reactome.server.service.utils.CORSFilter.doFilterInternal(CORSFilter.java:28)<br>
at
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)<br>
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)<br>
at
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505)<br>
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)<br>
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)<br>
at
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)<br>
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)<br>
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:423)<br>
at
org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1079)<br>
at
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:620)<br>
at
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:318)<br>
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)<br>
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)<br>
at
org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)<br>
at java.lang.Thread.run(Thread.java:745)
<br>
Caused by: org.apache.http.conn.HttpHostConnectException:
Connect to localhost:7474 [localhost/127.0.0.1] failed:
Connection refused (Connection refused)
<br>
at
org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:158)<br>
at
org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353)<br>
at
org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380)<br>
at
org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)<br>
at
org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184)<br>
at
org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88)
<br>
at
org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)<br>
at
org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184)<br>
at
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)<br>
at
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:107)<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:192)<br>
... 100 common frames omitted
<br>
Caused by: java.net.ConnectException: Connection refused
(Connection refused)
<br>
at java.net.PlainSocketImpl.socketConnect(Native
Method)
<br>
at
java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)<br>
at
java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)<br>
at
java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)<br>
at
java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
<br>
at java.net.Socket.connect(Socket.java:589)
<br>
at
org.apache.http.conn.socket.PlainConnectionSocketFactory.connectSocket(PlainConnectionSocketFactory.java:74)<br>
at
org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:141)<br>
... 110 common frames omitted
</td>
</tr>
<tr class="error even">
<td class="Date">2017-11-01 12:13:49,050</td>
<td class="Thread">http-bio-8080-exec-93</td>
<td class="Level">ERROR</td>
<td class="Logger">errorLogger</td>
<td class="MDC"><br>
</td>
<td class="Message">An unspecified exception was caught for
request:
<a class="moz-txt-link-freetext" href="http://localhost:8080/ContentService/data/pathways/low/entity/R-OSA-1114672/allForms">http://localhost:8080/ContentService/data/pathways/low/entity/R-OSA-1114672/allForms</a></td>
</tr>
<tr>
<td class="Exception" colspan="6">org.neo4j.ogm.drivers.http.request.HttpRequestException:
<a class="moz-txt-link-freetext" href="http://neo4j:react-app-user_pw@localhost:7474/db/data/transaction/commit">http://neo4j:react-app-user_pw@localhost:7474/db/data/transaction/commit</a>:
Connect to localhost:7474 [localhost/127.0.0.1] failed:
Connection refused (Connection refused)
<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:228)<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.executeRequest(HttpRequest.java:168)<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:129)<br>
at
org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:98)<br>
at
org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:78)<br>
at
org.neo4j.ogm.session.Neo4jSession.query(Neo4jSession.java:368)
<br>
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
<br>
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)<br>
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:498)
<br>
at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)<br>
at com.sun.proxy.$Proxy218.query(Unknown Source)
<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery$1.apply(QueryResultGraphRepositoryQuery.java:69)<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery$1.apply(QueryResultGraphRepositoryQuery.java:64)<br>
at
org.neo4j.ogm.session.delegates.TransactionsDelegate.doInTransaction(TransactionsDelegate.java:58)<br>
at
org.neo4j.ogm.session.Neo4jSession.doInTransaction(Neo4jSession.java:446)<br>
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
<br>
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)<br>
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:498)
<br>
at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)<br>
at com.sun.proxy.$Proxy218.doInTransaction(Unknown
Source)
<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery.mapToConcreteType(QueryResultGraphRepositoryQuery.java:64)<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery.execute(QueryResultGraphRepositoryQuery.java:52)<br>
at
org.springframework.data.neo4j.repository.query.GraphRepositoryQuery.execute(GraphRepositoryQuery.java:52)<br>
at
org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.doInvoke(RepositoryFactorySupport.java:482)<br>
at
org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:460)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.data.projection.DefaultMethodInvokingMethodInterceptor.invoke(DefaultMethodInvokingMethodInterceptor.java:61)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)<br>
at
org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)<br>
at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)<br>
at
com.sun.proxy.$Proxy242.getPathwaysForAllFormsOfByStId(Unknown
Source)
<br>
at
org.reactome.server.graph.service.PathwaysService.getPathwaysForAllFormsOf_aroundBody4(PathwaysService.java:47)<br>
at
org.reactome.server.graph.service.PathwaysService.getPathwaysForAllFormsOf_aroundBody5$advice(PathwaysService.java:33)<br>
at
org.reactome.server.graph.service.PathwaysService.getPathwaysForAllFormsOf(PathwaysService.java:1)<br>
at
org.reactome.server.service.controller.graph.PathwaysController.getPathwaysForAllFormsOf(PathwaysController.java:110)<br>
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
<br>
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)<br>
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:498)
<br>
at
org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:222)<br>
at
org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)<br>
at
org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110)<br>
at
org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:814)<br>
at
org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:737)<br>
at
org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)<br>
at
org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)<br>
at
org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)<br>
at
org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)<br>
at
org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:860)<br>
at
javax.servlet.http.HttpServlet.service(HttpServlet.java:624)
<br>
at
org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)<br>
at
javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)<br>
at
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.reactome.server.service.utils.CORSFilter.doFilterInternal(CORSFilter.java:28)<br>
at
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)<br>
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)<br>
at
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505)<br>
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)<br>
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)<br>
at
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)<br>
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)<br>
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:423)<br>
at
org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1079)<br>
at
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:620)<br>
at
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)<br>
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)<br>
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)<br>
at
org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)<br>
at java.lang.Thread.run(Thread.java:745)
<br>
Caused by: org.apache.http.conn.HttpHostConnectException:
Connect to localhost:7474 [localhost/127.0.0.1] failed:
Connection refused (Connection refused)
<br>
at
org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:158)<br>
at
org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353)<br>
at
org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380)<br>
at
org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)<br>
at
org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184)<br>
at
org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88)
<br>
at
org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)<br>
at
org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184)<br>
at
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)<br>
at
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:107)<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:192)<br>
... 100 common frames omitted
<br>
Caused by: java.net.ConnectException: Connection refused
(Connection refused)
<br>
at java.net.PlainSocketImpl.socketConnect(Native
Method)
<br>
at
java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)<br>
at
java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)<br>
at
java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)<br>
at
java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
<br>
at java.net.Socket.connect(Socket.java:589)
<br>
at
org.apache.http.conn.socket.PlainConnectionSocketFactory.connectSocket(PlainConnectionSocketFactory.java:74)<br>
at
org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:141)<br>
... 110 common frames omitted
</td>
</tr>
<tr class="error odd">
<td class="Date">2017-11-01 12:13:53,281</td>
<td class="Thread">http-bio-8080-exec-107</td>
<td class="Level">ERROR</td>
<td class="Logger">errorLogger</td>
<td class="MDC"><br>
</td>
<td class="Message">An unspecified exception was caught for
request:
<a class="moz-txt-link-freetext" href="http://localhost:8080/ContentService/data/pathways/low/entity/R-OSA-1114672">http://localhost:8080/ContentService/data/pathways/low/entity/R-OSA-1114672</a></td>
</tr>
<tr>
<td class="Exception" colspan="6">org.neo4j.ogm.drivers.http.request.HttpRequestException:
<a class="moz-txt-link-freetext" href="http://neo4j:react-app-user_pw@localhost:7474/db/data/transaction/commit">http://neo4j:react-app-user_pw@localhost:7474/db/data/transaction/commit</a>:
Connect to localhost:7474 [localhost/127.0.0.1] failed:
Connection refused (Connection refused)
<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:228)<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.executeRequest(HttpRequest.java:168)<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:129)<br>
at
org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:98)<br>
at
org.neo4j.ogm.session.delegates.ExecuteQueriesDelegate.query(ExecuteQueriesDelegate.java:78)<br>
at
org.neo4j.ogm.session.Neo4jSession.query(Neo4jSession.java:368)
<br>
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
<br>
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)<br>
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:498)
<br>
at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)<br>
at com.sun.proxy.$Proxy218.query(Unknown Source)
<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery$1.apply(QueryResultGraphRepositoryQuery.java:69)<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery$1.apply(QueryResultGraphRepositoryQuery.java:64)<br>
at
org.neo4j.ogm.session.delegates.TransactionsDelegate.doInTransaction(TransactionsDelegate.java:58)<br>
at
org.neo4j.ogm.session.Neo4jSession.doInTransaction(Neo4jSession.java:446)<br>
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
<br>
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)<br>
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:498)
<br>
at
org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:302)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:190)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)<br>
at
org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)<br>
at com.sun.proxy.$Proxy218.doInTransaction(Unknown
Source)
<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery.mapToConcreteType(QueryResultGraphRepositoryQuery.java:64)<br>
at
org.springframework.data.neo4j.repository.query.QueryResultGraphRepositoryQuery.execute(QueryResultGraphRepositoryQuery.java:52)<br>
at
org.springframework.data.neo4j.repository.query.GraphRepositoryQuery.execute(GraphRepositoryQuery.java:52)<br>
at
org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.doInvoke(RepositoryFactorySupport.java:482)<br>
at
org.springframework.data.repository.core.support.RepositoryFactorySupport$QueryExecutorMethodInterceptor.invoke(RepositoryFactorySupport.java:460)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.data.projection.DefaultMethodInvokingMethodInterceptor.invoke(DefaultMethodInvokingMethodInterceptor.java:61)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)<br>
at
org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)<br>
at
org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(PersistenceExceptionTranslationInterceptor.java:136)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:92)<br>
at
org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)<br>
at
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)<br>
at
com.sun.proxy.$Proxy242.getPathwaysForByStId(Unknown
Source)
<br>
at
org.reactome.server.graph.service.PathwaysService.getPathwaysFor_aroundBody2(PathwaysService.java:37)<br>
at
org.reactome.server.graph.service.PathwaysService.getPathwaysFor_aroundBody3$advice(PathwaysService.java:33)<br>
at
org.reactome.server.graph.service.PathwaysService.getPathwaysFor(PathwaysService.java:1)<br>
at
org.reactome.server.service.controller.graph.PathwaysController.getPathwaysFor(PathwaysController.java:95)<br>
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native
Method)
<br>
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)<br>
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at java.lang.reflect.Method.invoke(Method.java:498)
<br>
at
org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMethod.java:222)<br>
at
org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:137)<br>
at
org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:110)<br>
at
org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandlerMethod(RequestMappingHandlerAdapter.java:814)<br>
at
org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:737)<br>
at
org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:85)<br>
at
org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:959)<br>
at
org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:893)<br>
at
org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:969)<br>
at
org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:860)<br>
at
javax.servlet.http.HttpServlet.service(HttpServlet.java:624)
<br>
at
org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:845)<br>
at
javax.servlet.http.HttpServlet.service(HttpServlet.java:731)
<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:303)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:121)<br>
at
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.reactome.server.service.utils.CORSFilter.doFilterInternal(CORSFilter.java:28)<br>
at
org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:107)<br>
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:241)<br>
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:208)<br>
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:220)<br>
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:122)<br>
at
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:505)<br>
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:170)<br>
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)<br>
at
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:950)<br>
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:116)<br>
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:423)<br>
at
org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1079)<br>
at
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:620)<br>
at
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:316)<br>
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)<br>
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)<br>
at
org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)<br>
at java.lang.Thread.run(Thread.java:745)
<br>
Caused by: org.apache.http.conn.HttpHostConnectException:
Connect to localhost:7474 [localhost/127.0.0.1] failed:
Connection refused (Connection refused)
<br>
at
org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:158)<br>
at
org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353)<br>
at
org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380)<br>
at
org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)<br>
at
org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184)<br>
at
org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88)
<br>
at
org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)<br>
at
org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184)<br>
at
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)<br>
at
org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:107)<br>
at
org.neo4j.ogm.drivers.http.request.HttpRequest.execute(HttpRequest.java:192)<br>
... 100 common frames omitted
<br>
Caused by: java.net.ConnectException: Connection refused
(Connection refused)
<br>
at java.net.PlainSocketImpl.socketConnect(Native
Method)
<br>
at
java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)<br>
at
java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)<br>
at
java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)<br>
at
java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
<br>
at java.net.Socket.connect(Socket.java:589)
<br>
at
org.apache.http.conn.socket.PlainConnectionSocketFactory.connectSocket(PlainConnectionSocketFactory.java:74)<br>
at
org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:141)<br>
... 110 common frames omitted
</td>
</tr>
</tbody>
</table>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
<pre wrap="">_______________________________________________
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</pre>
</blockquote>
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