From daniel.lang at biologie.uni-freiburg.de Sun Sep 6 07:17:46 2009 From: daniel.lang at biologie.uni-freiburg.de (Daniel Lang) Date: Sun, 06 Sep 2009 13:17:46 +0200 Subject: [Po-dev] Number of tissue and cell types Message-ID: <4AA39A5A.3070206@biologie.uni-freiburg.de> Hi, sorry, if this is a bit off-topic. But after crawling the net and literature unsuccessfully for quite some time now, I thought that you might be the experts for this type of request: For a phylogenetic analysis we are desperately looking for estimates of the number of cell types and the number of different tissue types in the gametophytic and sporophytic generations of the following angiosperms: Arabidopsis lyrata Arabidopsis thaliana Carica papaya Glycine max Medicago truncatula Populus trichocarpa Ricinus communis Vitis vinifera Oryza sativa Sorghum bicolor Zea mays (current estimate: total 100 cell types) I've already tried to extract part of this data using the plant_structure associations from the database dump, but I am unsure whether the annotations are comprehensive enough to give a reliable answer? PO term associations including transitive indirect annotations: Arabidopsis thaliana gametophyte 10 Arabidopsis thaliana sporophyte 229 Oryza sativa gametophyte 4 Oryza sativa sporophyte 145 Zea mays gametophyte 2 Zea mays sporophyte 42 I would be excited to hear your estimates/data on this! Do you know of any web resources, literature or databases that would help us answer these questions? To conserve the data for future use, I will post the numbers to BioNumbers (http://bionumbers.hms.harvard.edu). Thank you very much in advance! Daniel From shuly at cshl.edu Tue Sep 8 19:23:03 2009 From: shuly at cshl.edu (Shuly Avraham) Date: Tue, 8 Sep 2009 19:23:03 -0400 Subject: [Po-dev] Plantontology website outage Message-ID: The plantontology website will be unavailable on Wednesday between 1pm-5pm EDT due to maintenance. A following message will be delivered as the website is back up. Shuly Avraham Gramene.org & Plantontology.org CSHL Ware Lab shuly at cshl.edu _______________________________________________ Warelab mailing list Warelab at brie4.cshl.edu http://brie4.cshl.edu/mailman/listinfo/warelab -------------- next part -------------- An HTML attachment was scrubbed... URL: From elserj at science.oregonstate.edu Thu Sep 24 17:42:32 2009 From: elserj at science.oregonstate.edu (Justin Elser) Date: Thu, 24 Sep 2009 14:42:32 -0700 Subject: [Po-dev] Plantontology changes (developers especially need to read this!) Message-ID: <4ABBE7C8.4060505@science.oregonstate.edu> An HTML attachment was scrubbed... URL: