[Po-dev] Relationship between Gene ontology and Plant ontology-Reg

[Pankaj Jaiswal (OSU)]

Dear S. Sathiyamoorthy,

As of now there is no connection between the GO and PO based on the 
terms that you may be looking for. Such as find all the molecular 
functions and processes that are found in leaf, xylem, phloem, SAM, etc.

However based on the annotations one can build connections. For this you 
will have to compare two files e.g. from TAIR for Arabidopsis. We 
provide the links to GO site database for the respective gene IDs if 
they exist.

#1 Arabidopsis gene annotations for PO
http://palea.cgrb.oregonstate.edu/viewsvn/Poc/trunk/associations/po_temporal_gene_arabidopsis_tair.assoc?revision=724&view=markup
and

#2 Arabidopsis gene annotations for GO
http://cvsweb.geneontology.org/cgi-bin/cvsweb.cgi/go/gene-associations/gene_association.tair.gz?rev=HEAD

All you may need is to find the AT gene IDs and compare the GO 
annotation and its localization in a associated PO term.

I hope it helps.

Pankaj

sathiyamoorthy s wrote:
> Dear plant ontology group,
> 
> I am sathiyamoorthy s doctoral student from kyung hee university from 
> South Korea, I am interested to give the cross reference of Plant 
> ontology for my transcriptome  plant sequences. Is there any 
> relationship between Gene ontology and Plant ontology. can i access the 
> PO using the GO ids.Please help me out.
> 
> Thank you
>  
> 
> -- 
> Regards,
> 
> S.Sathiyamoorthy .
> 
> 
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-- 
Pankaj Jaiswal
Assistant Professor
Dept. of Botany and Plant Pathology
3082 Cordley Hall
Oregon State University
Corvallis, OR, 97331-2902, USA

Ph.: +1-541-737-8471
Fax: +1-541-737-3573
Web: www.gramene.org
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