From naama.menda at gmail.com Thu Jul 2 11:42:46 2009 From: naama.menda at gmail.com (Naama Menda) Date: Thu, 2 Jul 2009 11:42:46 -0400 Subject: [Po-dev] tuber developmental stages In-Reply-To: <4A454125.2000203@science.oregonstate.edu> References: <40F38EDDE25B7B49B995267E735A9AEB2B3FDC@xmail.nybg.org> <60397.67.244.63.39.1246008823.squirrel@webmail.cornell.edu> <4A450812.8090408@science.oregonstate.edu> <4A4540CD.70009@science.oregonstate.edu> <4A454125.2000203@science.oregonstate.edu> Message-ID: thanks Pankaj! Chih Wei, please let us know when you have the new release of PO with these terms. We have annotations in SGN that will be mapped to the new tuber -related terms. -Naama Naama Menda Boyce Thompson Institute for Plant Research Tower Rd Ithaca NY 14853 USA (607) 254 3569 Sol Genomics Network http://www.sgn.cornell.edu nm249 at cornell.edu On Fri, Jun 26, 2009 at 5:44 PM, Pankaj Jaiswal (OSU) < jaiswalp at science.oregonstate.edu> wrote: > I see. Then we need to define two terms clearly under 'plant structure' for > 'tubers' > > http://www.plantontology.org/amigo/go.cgi?xpand=PO:0004543&search_constraint=terms&query=PO:0004543&view=details&show_associations=list > they should be root tuber and stem/shoot tuber. The current term PO:0004543 > : tuber is suggesting only a shoot/stem tuber only. > > Chih-Wei pl. add a new SF item for 'tuber'. > > Pankaj > > Pankaj Jaiswal (OSU) wrote: > >> >> >> Peter Stevens wrote: >> > spuds are stem tubers; other taxa have root tubers... >> > >> > P. >> >> > _______________________________________________ > Po-dev mailing list > Po-dev at plantontology.org > http://mail.plantontology.org/mailman/listinfo/po-dev > -------------- next part -------------- An HTML attachment was scrubbed... URL: From dws at nybg.org Thu Jul 2 12:28:09 2009 From: dws at nybg.org (Dws) Date: Thu, 2 Jul 2009 12:28:09 -0400 Subject: [Po-dev] tuber developmental stages In-Reply-To: Message-ID: <40F38EDDE25B7B49B995267E735A9AEB282309@xmail.nybg.org> Technically in anatomy and morphology, tuber is used only for stems. Sometimes in the general language of ecology etc it is used for swollen roots as a mistake or mistaken identity. Conversely, tubers are often called roots but mistake. I think using tuber for stems and root tuber for swollen roots would be best. There is no need to add adjectives to the proper definition. Dennis -----Original Message----- From: po-dev-bounces at plantontology.org [mailto:po-dev-bounces at plantontology.org] On Behalf Of Naama Menda Sent: Thursday, July 02, 2009 11:43 AM To: Pankaj Jaiswal (OSU); Chih-Wei Tung Cc: Anuradha Pujar; po-dev at plantontology.org Subject: Re: [Po-dev] tuber developmental stages thanks Pankaj! Chih Wei, please let us know when you have the new release of PO with these terms. We have annotations in SGN that will be mapped to the new tuber -related terms. -Naama Naama Menda Boyce Thompson Institute for Plant Research Tower Rd Ithaca NY 14853 USA (607) 254 3569 Sol Genomics Network http://www.sgn.cornell.edu nm249 at cornell.edu On Fri, Jun 26, 2009 at 5:44 PM, Pankaj Jaiswal (OSU) < jaiswalp at science.oregonstate.edu> wrote: > I see. Then we need to define two terms clearly under 'plant structure' for > 'tubers' > > http://www.plantontology.org/amigo/go.cgi?xpand=PO:0004543&search_constr aint=terms&query=PO:0004543&view=details&show_associations=list > they should be root tuber and stem/shoot tuber. The current term PO:0004543 > : tuber is suggesting only a shoot/stem tuber only. > > Chih-Wei pl. add a new SF item for 'tuber'. > > Pankaj > > Pankaj Jaiswal (OSU) wrote: > >> >> >> Peter Stevens wrote: >> > spuds are stem tubers; other taxa have root tubers... >> > >> > P. >> >> > _______________________________________________ > Po-dev mailing list > Po-dev at plantontology.org > http://mail.plantontology.org/mailman/listinfo/po-dev > Checked by AVG - www.avg.com Version: 8.5.375 / Virus Database: 270.13.2/2214 - Release Date: 07/02/09 05:54:00 From elserj at science.oregonstate.edu Thu Jul 2 20:11:57 2009 From: elserj at science.oregonstate.edu (Justin Elser) Date: Thu, 02 Jul 2009 17:11:57 -0700 Subject: [Po-dev] Please test the mirror of plantontology.org Message-ID: <4A4D4CCD.7080303@science.oregonstate.edu> In anticipation of the move for plantontology.org to Oregon State University, a mirror has been set up at http://plantontology.cgrb.oregonstate.edu. Please test to make sure it is behaving properly and returning the correct results. Any issues should be sent to elserj at science.oregonstate.edu justin -- ********************************************************** * * * Justin Elser * * Computational Biology Post Doc * * Dept. of Botany and Plant Pathology * * Oregon State University * * * * email: elserj at science.oregonstate.edu * * internet: www.science.oregonstate.edu/~elserj * * * **********************************************************