[Po-dev] FW: sure is a problem with obo-edit

[Mary (Polacco) Schaeffer]

Hi Pankaj,
Toni Kazic, my colleague at MU in Computer Science is looking at the Plant
Ontology, towards using it in a computational reasoner. ON Friday, she
showed me a PO heirarchy pulled from the obo-editor and it looked very
strange, aka wrong.  I can answer the below question, but wonder if there is
something else to worry about with obo-edit that everyone knows, but is not
documented,
  Best,
  mary
------ Forwarded Message
> From: Toni Kazic <kazict at missouri.edu>
> Date: Fri, 25 Jul 2008 20:41:39 -0500
> To: Mary Schaeffer mu <schaefferm at missouri.edu>
> Cc: Toni Kazic <kazict at missouri.edu>
> Subject: sure is a problem with obo-edit
> 
> and maybe also the viewer at the POC web site.  Certainly obo-edit
> leaves out many, many nodes when navigating the display.
> 
> Question:  in the following
> 
> ~sperm cell ; PO:0000084, PO:0020098 ; CL:0000366 ; synonym:sperm
> nucleus < male gametophyte ; PO:0020091 % plant cell ; PO:0009002
> 
> 
> does this mean
> 
> sperm cell < male gametophyte
>          sperm cell % plant cell
> 
> or
> 
> sperm cell < male gametophyte
>          male gametophyte % plant cell
> 
> 
> ?
> 
> This case is not covered in the documentation ;-).
> 
> 
> thanks and cheers,
> 
> Toni

------ End of Forwarded Message

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