[Po-dev] Questions about associations

[Mary (Polacco) Schaeffer]

Shuly, Chih-Wei and group.

Getting ready to send in new MaizeGDB associations files and have a few
questions about format since I last did this.

Looking at  the cvs, it seem we are taking in associations to:
    genes
    QTL
    stocks or germplasm (Mutant)
QUESTION: Others? 

It seems on our new, and rather swank interface, that there is a slot for
Œsequence¹ and when null, it states:
      No peptide sequence available.
For example, look up pericarp,
     then the Arabidopsis gene ŒCYP707A1¹
But, when I look at the record in question at TAIR, it seems there must be
some peptide sequence.
QUESTOIN: So, what is this field all about? OR rather, what must be done to
populate it?

In the same record, there is a column indicating that it has a GO
association?
QUESTION: how does that get into the PO browser?


Is there anything else I should be doing?

     Mary

  
-- 
> Mary Schaeffer, PhD (f/k/a Mary Polacco)
> Geneticist/Curator MaizeGDB
> USDA/ARS Plant Genetics Research Unit
> 203 Curtis Hall
> Adj Assoc Professor
> Division of Plant Sciences
> University of Missouri
> Columbia, MO 65211
> Phone: 573 884 7873
> FAX: 573 884 7850




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