From SchaefferM at missouri.edu Mon Oct 1 16:54:08 2007 From: SchaefferM at missouri.edu (Mary (Polacco) Schaeffer) Date: Mon, 01 Oct 2007 15:54:08 -0500 Subject: [Po-dev] Www page correction Message-ID: Keepers of the PO, On this page, http://www.plantontology.org/download/download.html Note that the statement: > ? * Both Gramene and TAIR database projects have started using the plant > structure ontology developed by POC for flowering plants. They have retired > the cereal and Arabidopsis specific anatomy ontologies previously developed by > them. You can still download the species specific ontologies by visiting the > download links. > ? Is not complete. This is more correct and inclusive. Please change to something like: > * Gramene, TAIR, MaizeGDB and (others?) database projects are using the plant > structure ontology developed by POC for flowering plants. Both Gramene and > TAIR have retired the cereal and Arabidopsis specific anatomy ontologies > previously developed by them. You can still download the species specific > ontologies by visiting the download links. > Thanks much, mary -- Mary Schaeffer, PhD (f/k/a Mary Polacco) Geneticist/Curator MaizeGDB USDA/ARS Plant Genetics Research Unit 203 Curtis Hall Adj Assoc Professor Division of Plant Sciences University of Missouri Columbia, MO 65211 Phone: 573 884 7873 FAX: 573 884 7850 -------------- next part -------------- An HTML attachment was scrubbed... URL: From cwt6 at cornell.edu Tue Oct 2 11:53:33 2007 From: cwt6 at cornell.edu (Chih-Wei Tung) Date: Tue, 2 Oct 2007 11:53:33 -0400 Subject: [Po-dev] Www page correction In-Reply-To: References: Message-ID: <0EC8C197-71B9-4F91-85BD-AD8B521B90A4@cornell.edu> Hi Mary, Thank you for reporting this, I have corrected it. You can find the update in http://dev.plantontology.org/download/download.html I will tell Shuly to bring this change to the live site. Chih-Wei On Oct 1, 2007, at 4:54 PM, Mary (Polacco) Schaeffer wrote: > > Keepers of the PO, > > On this page, > > http://www.plantontology.org/download/download.html > > Note that the statement: > >> ? * Both Gramene and TAIR database projects have started using the >> plant structure ontology developed by POC for flowering plants. >> They have retired the cereal and Arabidopsis specific anatomy >> ontologies previously developed by them. You can still download >> the species specific ontologies by visiting the download links. >> ? > > Is not complete. This is more correct and inclusive. Please change > to something like: > >> * Gramene, TAIR, MaizeGDB and (others?) database projects are >> using the plant structure ontology developed by POC for flowering >> plants. Both Gramene and TAIR have retired the cereal and >> Arabidopsis specific anatomy ontologies previously developed by >> them. You can still download the species specific ontologies by >> visiting the download links. >> > Thanks much, > mary > > > -- > Mary Schaeffer, PhD (f/k/a Mary Polacco) > Geneticist/Curator MaizeGDB > USDA/ARS Plant Genetics Research Unit > 203 Curtis Hall > Adj Assoc Professor > Division of Plant Sciences > University of Missouri > Columbia, MO 65211 > Phone: 573 884 7873 > FAX: 573 884 7850 > > > _______________________________________________ > Po-dev mailing list > Po-dev at plantontology.org > http://mail.plantontology.org/mailman/listinfo/po-dev -------------- next part -------------- An HTML attachment was scrubbed... URL: From shuly at cshl.edu Wed Oct 3 13:47:39 2007 From: shuly at cshl.edu (Shuly Avraham) Date: Wed, 3 Oct 2007 13:47:39 -0400 Subject: [Po-dev] Www page correction In-Reply-To: <0EC8C197-71B9-4F91-85BD-AD8B521B90A4@cornell.edu> References: <0EC8C197-71B9-4F91-85BD-AD8B521B90A4@cornell.edu> Message-ID: <4EAE72A7-FA52-4093-8108-292EBCC7A42B@cshl.edu> Done! Shuly. On Oct 2, 2007, at 11:53 AM, Chih-Wei Tung wrote: > Hi Mary, > > Thank you for reporting this, I have corrected it. You can find the > update in http://dev.plantontology.org/download/download.html > I will tell Shuly to bring this change to the live site. > > Chih-Wei > > > On Oct 1, 2007, at 4:54 PM, Mary (Polacco) Schaeffer wrote: > >> >> Keepers of the PO, >> >> On this page, >> >> http://www.plantontology.org/download/download.html >> >> Note that the statement: >> >>> ? * Both Gramene and TAIR database projects have started using >>> the plant structure ontology developed by POC for flowering >>> plants. They have retired the cereal and Arabidopsis specific >>> anatomy ontologies previously developed by them. You can still >>> download the species specific ontologies by visiting the download >>> links. >>> ? >> >> Is not complete. This is more correct and inclusive. Please change >> to something like: >> >>> * Gramene, TAIR, MaizeGDB and (others?) database projects are >>> using the plant structure ontology developed by POC for >>> flowering plants. Both Gramene and TAIR have retired the cereal >>> and Arabidopsis specific anatomy ontologies previously developed >>> by them. You can still download the species specific ontologies >>> by visiting the download links. >>> >> Thanks much, >> mary >> >> >> -- >> Mary Schaeffer, PhD (f/k/a Mary Polacco) >> Geneticist/Curator MaizeGDB >> USDA/ARS Plant Genetics Research Unit >> 203 Curtis Hall >> Adj Assoc Professor >> Division of Plant Sciences >> University of Missouri >> Columbia, MO 65211 >> Phone: 573 884 7873 >> FAX: 573 884 7850 >> >> >> _______________________________________________ >> Po-dev mailing list >> Po-dev at plantontology.org >> http://mail.plantontology.org/mailman/listinfo/po-dev > -------------- next part -------------- An HTML attachment was scrubbed... URL: From shuly at cshl.edu Tue Oct 9 17:50:57 2007 From: shuly at cshl.edu (Shuly Avraham) Date: Tue, 9 Oct 2007 17:50:57 -0400 Subject: [Po-dev] Re: Feedback on POC In-Reply-To: <200710091756.l99Hu8V0012254@filetta.cshl.edu> References: <200710091756.l99Hu8V0012254@filetta.cshl.edu> Message-ID: <712E8ED6-97D5-4C53-B003-A7C5A326DFB0@cshl.edu> Hi Tanya, Links to TAIR downloads have been removed. Thanks for the catch. Shuly. On Oct 9, 2007, at 1:56 PM, feedback_submission at plantontology.org wrote: > *** Feedback from Plant Ontology Live Site *** > > refer_to_url: http://plantontology.org/download/download.html > > comments: Can you please remove the links and references to the > Arabidopsis specific ontologies on this page? We are no longer > using them nor maintaining them. Thanks. > > name: Tanya Berardini > > email: tberardini at arabidopsis.org > > organization: TAIR > > send_feedback: Send your feedback > From pj37 at cornell.edu Tue Oct 9 22:49:31 2007 From: pj37 at cornell.edu (Pankaj Jaiswal) Date: Tue, 09 Oct 2007 22:49:31 -0400 Subject: [Po-dev] Re: Feedback on POC In-Reply-To: <712E8ED6-97D5-4C53-B003-A7C5A326DFB0@cshl.edu> References: <200710091756.l99Hu8V0012254@filetta.cshl.edu> <712E8ED6-97D5-4C53-B003-A7C5A326DFB0@cshl.edu> Message-ID: <470C3DBB.6000104@cornell.edu> TAIR may not be, but other might still be using it. That's why it was still there. pankaj Shuly Avraham wrote: > Hi Tanya, > > Links to TAIR downloads have been removed. > > Thanks for the catch. > Shuly. > > On Oct 9, 2007, at 1:56 PM, feedback_submission at plantontology.org wrote: > >> *** Feedback from Plant Ontology Live Site *** >> >> refer_to_url: http://plantontology.org/download/download.html >> >> comments: Can you please remove the links and references to the >> Arabidopsis specific ontologies on this page? We are no longer using >> them nor maintaining them. Thanks. >> >> name: Tanya Berardini >> >> email: tberardini at arabidopsis.org >> >> organization: TAIR >> >> send_feedback: Send your feedback >> > > _______________________________________________ > Po-dev mailing list > Po-dev at plantontology.org > http://mail.plantontology.org/mailman/listinfo/po-dev > -- Pankaj Jaiswal G-15, Bradfield Hall Dept. of Plant Breeding and Genetics Cornell University Ithaca, NY-14853, USA Ph. +1-607-255-3103 +1-607-255-4199 Fax: +1-607-255-6683 Web: www.gramene.org www.plantontology.org From tberardi at acoma.stanford.edu Thu Oct 11 13:58:27 2007 From: tberardi at acoma.stanford.edu (Tanya Berardini) Date: Thu, 11 Oct 2007 10:58:27 -0700 Subject: [Po-dev] Re: Feedback on POC In-Reply-To: <470C3DBB.6000104@cornell.edu> References: <200710091756.l99Hu8V0012254@filetta.cshl.edu> <712E8ED6-97D5-4C53-B003-A7C5A326DFB0@cshl.edu> <470C3DBB.6000104@cornell.edu> Message-ID: <470E6443.30403@acoma.stanford.edu> But we really don't want anyone to be using these vocabularies anymore so it's good that they are no longer visible. Thanks, Tanya Pankaj Jaiswal wrote: > TAIR may not be, but other might still be using it. That's why it was > still there. > > pankaj > > Shuly Avraham wrote: >> Hi Tanya, >> >> Links to TAIR downloads have been removed. >> >> Thanks for the catch. >> Shuly. >> >> On Oct 9, 2007, at 1:56 PM, feedback_submission at plantontology.org wrote: >> >>> *** Feedback from Plant Ontology Live Site *** >>> >>> refer_to_url: http://plantontology.org/download/download.html >>> >>> comments: Can you please remove the links and references to the >>> Arabidopsis specific ontologies on this page? We are no longer using >>> them nor maintaining them. Thanks. >>> >>> name: Tanya Berardini >>> >>> email: tberardini at arabidopsis.org >>> >>> organization: TAIR >>> >>> send_feedback: Send your feedback >>> >> >> _______________________________________________ >> Po-dev mailing list >> Po-dev at plantontology.org >> http://mail.plantontology.org/mailman/listinfo/po-dev >> > -- ------------------------------------------------------------------------------------------ Tanya Berardini, Ph.D. tberardi at acoma.stanford.edu The Arabidopsis Information Resource FAX: (650) 325-6857 Carnegie Institution of Washington Tel: (650) 325-1521 ext. 325 Department of Plant Biology URL: http://arabidopsis.org/ 260 Panama St. Stanford, CA 94305 ------------------------------------------------------------------------------------------