[Fwd: [ geneontology-Curator requests-929957 ] vivipary]

[J Clark]

Hi,

How about this as a proposal?

[i]germination
---[i]germination on parent plant ; GO:new

[i]asexual reproduction
---[i]vegetative vivipary (sensu Magnoliophyta) ; GO:new

Term:germination on parent plant
synonym: non-vegetative vivipary (sensu Magnoliophyta)

Term: vegetative vivipary (sensu Magnoliophyta)
synonym: pre-harvest sprouting

Thanks,

Jen






David Marshall wrote:

> preharvest sprouting is of particular interest. There are a number of  advances at the molecular level. It is interesting to place preharvest sprouting in the context of related processes i.e. grain development, "normal germination", dormance and in the case of barley- malting.
>  
> David Marshall
> 
> 	-----Original Message----- 
> 	From: owner-po-dev at plantontology.org on behalf of Tinker, Nicholas 
> 	Sent: Tue 28/06/2005 19:05 
> 	To: Tom Blake; Mary Polacco; po-dev at plantontology.org, Pankaj Jaiswal; POC-dev 
> 	Cc: 
> 	Subject: RE: [Fwd: [ geneontology-Curator requests-929957 ] vivipary]
> 	
> 	
> 
> 	But,
> 	If an ontology defines "vivipary" as a "type of" preharvest sprouting
> 	(or vice-versa) then won't it help the corn people do comparative
> 	genomics with the barley people? 
> 	
> 	>
> 	> Hi folks,
> 	>    In the small grains, this is called preharvest sprouting.  It's
> 	> well-understood, and as Mary suggests is the result of lack of seed
> 	> dormancy
> 	> and a wet harvest environment.  Calling it vivipary won't improve
> 	> understanding of the process.  In both barley and wheat the genetics
> 	of
> 	> dormancy and of preharvest sprouting is pretty well-understood.
> 	> Cheers,
> 	> Tom Blake, barley breeder, Montana State University
> 	>
> 	> -----Original Message-----
> 	> From: grains-request at greengenes.cit.cornell.edu
> 	> [mailto:grains-request at greengenes.cit.cornell.edu] On Behalf Of Mary
> 	> Polacco
> 	> Sent: Tuesday, June 28, 2005 11:04 AM
> 	> To: po-dev at plantontology.org, Pankaj Jaiswal; POC-dev
> 	> Cc: Jennifer I Clark; rice-e-net at chanko.lab.nig.ac.jp;
> 	> grains at greengenes.cit.cornell.edu
> 	> Subject: Re: [Fwd: [ geneontology-Curator requests-929957 ] vivipary]
> 	>
> 	> Is there going to be consideration of the related process, dormancy?
> 	>
> 	> > From: Pankaj Jaiswal <pj37 at cornell.edu>
> 	> > Reply-To: po-dev at plantontology.org, Pankaj Jaiswal
> 	<pj37 at cornell.edu>
> 	> > Date: Tue, 28 Jun 2005 09:57:44 -0400
> 	> > To: POC-dev <po-dev at plantontology.org>
> 	> > Cc: Jennifer I Clark <jenclark at ebi.ac.uk>,
> 	> rice-e-net at chanko.lab.nig.ac.jp,
> 	> > grains at greengenes.cit.cornell.edu
> 	> > Subject: [Fwd: [ geneontology-Curator requests-929957 ] vivipary]
> 	> >
> 	> > Hi Everyone,
> 	> >
> 	> > I though that some people from the plant community may be interested
> 	in
> 	> > the discussion on adding a new term VIVIPARY (and its instances ??)
> 	in
> 	> > the Gene Ontology.
> 	> >
> 	> > Please follow the link below on the discussion
> 	> >
> 	>
> 	https://sourceforge.net/tracker/?func=detail&atid=440764&aid=929957&grou
> 	p_
> 	> id
> 	> =3
> 	> > 6855
> 	> >
> 	> > A couple of questions are:
> 	> >
> 	> > #1 whether we need the two instances of a generic term VIVIPARY
> 	> >
> 	> > vegetative vivipary (sensu Magnoliophyta)
> 	> > non-vegetative vivipary (sensu Magnoliophyta)
> 	> >
> 	> >
> 	> > #2 Is there anything called as vegetative vivipary.
> 	> >
> 	> >
> 	> > BY definition, in cereal plants or elsewhere, vivipary is defined as
> 	> >
> 	> > "A process promoting the germination of embryos while still attached
> 	to
> 	> > the mother plant. "
> 	> >
> 	> > -Pankaj
> 	> >
> 	> >
> 	> >
> 	> >
> 	
> 	
> 	
> 
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