PO users question - batch queries (fwd) (PR#51)

[Katica Ilic]

Dear Jim,

You can’t do this at the POC web site, simply because we don’t have GO
associations uploaded to our PO AmiGO browser, but you can do it at TAIR web
site (http://arabidopsis.org/):

1. On the main page, click on the Bulk Downloads (under Analysis Tools),
2. Click on GO Annotations,
3. Upload your AGI loci in the box,
4. Click on Get all Go Annotations...

...and you should get a table with all the GO annotations. If you have more than
1000 loci, only text output will be given.

Good luck and let me know if you need any further help with bulk downloads for
Arabidopsis.

Best regards,

Katica Ilic, POC Project Coordinator

> Date: Mon, 3 Jan 2005 10:34:40 -0800
> From: jmtepp at uclink.berkeley.edu
> Reply-To: po-dev at plantontology.org, jmtepp at uclink.berkeley.edu
> To: po at plantontology.org
> Subject: batch queries?
> 
> Dear Plant Ontology Folks
> 
> I'd like to do a batch query for all the GO data for a subset of
> genes in Arabidopsis (~1500)  using AGI locus designations.  Is this
> possible on your website?
> 
> Jim Tepperman
> -- 
> James M. Tepperman
> Department of Plant and Microbial Biology
> University of California at Berkeley
> USDA/Plant Gene Expression Center
> 800 Buchanan St.
> Albany, CA  94710
> 
> Tel:  510-559-5935
> Fax;  510-559-5678
> email:  jmtepp at berkeley.edu
> 
> 
Katica Ilic, TAIR Curator,	     E-mail: katica at acoma.stanford.edu	
The Arabidopsis Information Resource	Tel: (650) 325-1521 ext. 253	
Carnegie Institution of Washington	Fax: (650) 325-6857	
Department of Plant Biology	        URL: http://arabidopsis.org/		
260 Panama St.
Stanford, CA 94305, U.S.A.