Mapping file for maize terms WITH annotation in MaizeGDB

[Katica Ilic]

Mary,

I forgot to add comments on the very last part (C)

On Tue, 14 Sep 2004, Mary Polacco wrote:

>
> C. in addition to Part A above, some terms in MaizeGDB should remain
> different, but be 'synonymized' with the PO term:

They already are all synonyms of PO terms.

>  MaizeGDB: 11089 kernel > PO: fruit ; PO:0009001

Kernel is synonym of fruit, so this mapping is fine.


>  MaizeGDB: 24759 cob > PO: central spike of ear ; PO:0006505

This too

>  MaizeGDB: 24742 husk > PO: infloresence bract of ear ; PO:0006337

This one too, so all the annotations to husk in MAizeGDB are going to show
up under inflorescence bract of the ear, when you do a query in PO AmiGO.


Katica

>
> -mary
>
> ++++++++++++++++++++++++++++++++++++++++++++++++++
>
>
>
>
> MaizeGDB: 79057 shoot apical meristem > PO: shoot apical meristem ;
> PO:0020148
>
> MaizeGDB: 64470 node > PO: node ; PO:0020141
>
> MaizeGDB: 64474 mid rib > PO: mid vein ; PO:0020139
>
> MaizeGDB: 1861 leaf > PO: leaf ; PO:0009025
>
> MaizeGDB: 24738 leaf apex > PO: leaf apex ; PO:0020137
>
> MaizeGDB: 24736 auricle > PO: auricle ; PO:0020106
>
> MaizeGDB: 45980 leaf cuticle > PO: leaf epidermis ; PO:0006016
>
> MaizeGDB: 104000 leaf epidermis > PO: leaf epidermis ; PO:0006016
>
> MaizeGDB: 131140 guard cell > PO: guard cell ; PO:0000293
>
> MaizeGDB: 64473 ligule > PO: ligule ; PO:0020105
>
> MaizeGDB: 13810 leaf sheath > PO: leaf sheath ; PO:0020104
>
> MaizeGDB: 894644 leaf base > PO: leaf base ; PO:0020040
>
> MaizeGDB: 24740 leaf lamina > PO: leaf lamina ; PO:0020039
>
> MaizeGDB: 65488 leaf margin > PO: leaf margin ; PO:0020128
>
> MaizeGDB: 11056 coleoptile > PO: coleoptile ; PO:0020033
>
> MaizeGDB: 58047 stalk > PO: stem ; PO:0009047
>
> MaizeGDB: 58047 stalk > PO: leaf sheath ; PO:0020104
>
> MaizeGDB: 60674 stem > PO: stem ; PO:0009047
>
>
>
> MaizeGDB: 106160 shoot > PO: shoot ; PO:0009006
>
> MaizeGDB: 24734 root > PO: root ; PO:0009005
>
> MaizeGDB: 106152 primary root > PO: primary root ; PO:0020127
>
> MaizeGDB: 40516 root cap > PO: root cap ; PO:0020123
>
> MaizeGDB: 894753 nodal root > PO: nodal root ; PO:0003005
>
> MaizeGDB: 100045 root hair > PO: root hair ; PO:0000256
>
>
>
> MaizeGDB: 100180 inflorescence > PO: inflorescence ; PO:0009049
>
> MaizeGDB: 64471 glume > PO: glume ; PO:0009039
>
>
>
> MaizeGDB: 24979 ear > PO: ear ; PO:0020136
>
> MaizeGDB: 11089 kernel > PO: fruit ; PO:0009001
>
> MaizeGDB: 13807 pericarp > PO: pericarp ; PO:0009084
>
> MaizeGDB: 1860 aleurone > PO: aleurone layer ; PO:000536
>
> MaizeGDB: 11053 plumule > PO: plumule ; PO:0020032
>
> MaizeGDB: 894610 cotyledon > PO: cotyledon ; PO:0020030
>
> MaizeGDB: 11087 embryo > PO: embryo ; PO:0009009
>
> MaizeGDB: 86197 embryo axis > PO: embryo axis ; PO:0019018
>
> MaizeGDB: 15814 endosperm > PO: endosperm ; PO:0009089
>
> MaizeGDB: 11042 scutellum > PO: scutellum ; PO:0020110
>
> MaizeGDB: 24759 cob > PO: central spike of ear ; PO:0006505
>
> MaizeGDB: 167982 glume of ear spikelet > PO: glume of ear spikelet ;
> PO:0006367
>
> MaizeGDB: 24742 husk > PO: infloresence bract of ear ; PO:0006337
>
> MaizeGDB: 64631 female gametophyte > PO: female gametophyte ; PO:0020092
>
> MaizeGDB: 24753 silk > PO: silk ; PO:0006488
>
>
>
> MaizeGDB: 24990 tassel > PO: tassel ; PO:0020126
>
> MaizeGDB: 64630 male gametophyte > PO: male gametophyte ; PO:0020091
>
> MaizeGDB: 15809 pollen > PO: male gametophyte ; PO:0020091
>
> MaizeGDB: 24749 anther > PO: anther ; PO:0006473
>
> MaizeGDB: 24746 glume of tassel spikelet > PO: glume of tassel spikelet ;
> PO:0006368
>
> MaizeGDB: 167379 central spike of tassel > PO: central spike of tassel ;
> PO:0006324
>
>
>
>
>
>

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Katica Ilic             		katica at acoma.stanford.edu
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