[Fwd: Re: AmiGO 2.0]

[Pankaj Jaiswal]

-------- Original Message --------
Subject: Re: AmiGO 2.0
Date: Wed, 26 May 2004 14:09:14 -0400
From: Pankaj Jaiswal <pj37 at cornell.edu>
To: Chris Mungall <cjm at fruitfly.org>
CC: Bradley Marshall <bradmars at fruitfly.org>, go list 
<go at genome.stanford.edu>
References: <Pine.LNX.4.44.0405260902320.9786-100000 at sos.lbl.gov>



Chris Mungall wrote:

>>What is not possible is if the people try to search using MONOCOT/DICOT
>>as text and not the species.
>>
>>#4 show me all the genes from MONOCOT (or DICOT) species expressed in
>>plastids
>>
>>Monocots may include (rice/maize/onion/sorghum/wheat/oat etc)
>>Dicot may include (Arabidopsis, Brassica, Medicago, Tomato etc.)
>>
>>
>>So # 1-3 is fine, but #4 may need some discussion on DB, since we store
>>only the species and not the phyla/classes.
> 
> 
> Hi Pankaj
> 
> It wouldn't be too hard to add the different phylogeny clades to the db, I
> didn't plan to add them in the immediate future, but if people will find
> this useful I'll start thinking about the most efficient way to do
> this...
> 
> 
At least Plant people would like to see it happening now. On a wider
interest group, since we are using the GO database schema and the Amigo
for POC project it would be useful to have this option.

Thanks
Pankaj





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Pankaj Jaiswal, PhD
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Dept. of Plant Breeding
Cornell University
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