spatial terms

[Pankaj Jaiswal]

Hi Richard,

This is great. May be we can learn something from your experience.

Cheers
Pankaj


Bruskiewich, Richard (IRRI) said:
> Hi Pankaj,
>
> I'd be willing at our end to explore the PATO framework a bit further,
> both
> in software/database terms and in terms of curation, to better cataloging
> rice mutant phenotypes (starting with IRRI's IR64 mutants) :-))
>
> Cheers
> Richard
>
> -----Original Message-----
> From: Pankaj Jaiswal [mailto:pj37 at cornell.edu]
> Sent: Tuesday, March 23, 2004 11:31 PM
> To: po-dev at plantontology.org
> Subject: Re: spatial terms
>
> Hi Richard,
>
> We have just started this exploration exercise and would like to wait on
> committing something that requires more of our efforts.
>
> Best
> Pankaj
>
> Bruskiewich, Richard (IRRI) wrote:
>
>> Why is PATO so far away from implementation?
>>
>
>
>
>
>
>> -----Original Message-----
>> From: Pankaj Jaiswal [mailto:pj37 at cornell.edu]
>> Sent: Monday, March 22, 2004 11:15 PM
>> To: POC-dev
>> Subject: spatial terms
>>
>>
>> Hi Everyone,
>>
>> I just now started working on the leaf section and encountered the
>> problem on how do we represent the spatial organization. Since
>> PATO/phenotype attribute ontology is way off from implementation what
>> are our rules on this.
>>
>> here are a few spatial attribute examples which I think are necessary
>> to describe a gene's transcript/protein expression profile or a
>> phenotype.
>>
>>
>> first
>> second
>> third
>> fourth
>> fifth
>> 	e.g.
>> 	first leaf
>> 	second leaf
>> 	first / second internode
>> 	first / second node
>> basal
>> uppermost ; synonym:topmost
>> lower
>> upper
>> 	e.g.
>> 	basal / uppermost internodes
>> 	topmost leaves
>> 	lower floret
>> 	upper floret
>> primary
>> secondary
>> 	e.g.
>> 	primary / secondary panicle branches
>> 	spikelets of the primary branches
>>
>>
>>
>
> --
> ******************************
> Pankaj Jaiswal, PhD
> Gramene Database
> Department of Plant Breeding
> G-15 Bradfield Hall
> Cornell University
> Ithaca, NY-14853
>
> tel: +1-607-255-3103
> fax: +1-607-255-6683
> web: http://www.gramene.org
> *****************************
>
>


-- 
Pankaj Jaiswal
Gramene Database
www.gramene.org