spatial terms

[Pankaj Jaiswal]

Hi Richard,

We have just started this exploration exercise and would like to wait on 
committing something that requires more of our efforts.

Best
Pankaj

Bruskiewich, Richard (IRRI) wrote:

> Why is PATO so far away from implementation? 
> 





> -----Original Message-----
> From: Pankaj Jaiswal [mailto:pj37 at cornell.edu] 
> Sent: Monday, March 22, 2004 11:15 PM
> To: POC-dev
> Subject: spatial terms
> 
> 
> Hi Everyone,
> 
> I just now started working on the leaf section and encountered the problem
> on how do we represent the spatial organization. Since PATO/phenotype
> attribute ontology is way off from implementation what are our rules on
> this.
> 
> here are a few spatial attribute examples which I think are necessary to
> describe a gene's transcript/protein expression profile or a phenotype.
> 
> 
> first
> second
> third
> fourth
> fifth
> 	e.g.
> 	first leaf
> 	second leaf
> 	first / second internode
> 	first / second node
> basal
> uppermost ; synonym:topmost
> lower
> upper
> 	e.g.
> 	basal / uppermost internodes
> 	topmost leaves
> 	lower floret
> 	upper floret
> primary
> secondary
> 	e.g.
> 	primary / secondary panicle branches
> 	spikelets of the primary branches
> 
> 
> 

-- 
******************************
Pankaj Jaiswal, PhD
Gramene Database
Department of Plant Breeding
G-15 Bradfield Hall
Cornell University
Ithaca, NY-14853

tel: +1-607-255-3103
fax: +1-607-255-6683
web: http://www.gramene.org
*****************************