UniGene Library annotation --Question

Pankaj Jaiswal pj37 at cornell.edu
Tue Dec 7 11:17:50 EST 2004




Can somebody help me identify which plant structure terms I shall use 
for the following as described for the EXT library in GenBank records.
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<http://www.ncbi.nlm.nih.gov/UniGene/library.cgi?ORG=Os&LID=16310>
Organism: 	Oryza sativa subsp. japonica
Developmental stage: 	3-5 leaves plantlets
Sex: 	hermaphrodite
Cultivar: 	Nipponbare
Tissue: 	shoot apex
Organ: 	shoot apex

Do you think that annotating to the following will be acceptable.

term: shoot apical meristem
Accession: PO:0020148
___________________________________

For the following
http://www.ncbi.nlm.nih.gov/UniGene/library.cgi?ORG=Os&LID=10901

Organism: 	Oryza sativa (japonica cultivar-group)
Developmental stage: 	two weeks old seedling
Cultivar: 	Lansheng
Organ: 	all plant

According to the recent suggestion, should this be annotated to
"whole plant" term or to the "sporophyte".

Personally I would like to annotate it to term "sporophyte" with an 
additional annotation to the appropriate growth stage.

--------------------------------

Similar situation is for the following

http://www.ncbi.nlm.nih.gov/UniGene/library.cgi?ORG=Os&LID=11046

Organism: 	Oryza sativa
Developmental stage: 	Two-week-old rice seeding infested by brown 
planthopper
Strain: 	B5 resistant variety to brown planthopper
Vector: 	pT-Adv


************************
Pankaj Jaiswal, PhD
G15-Bradfield Hall
Dept. of Plant Breeding
Cornell University
Ithaca, NY-14853, USA

Tel: +1-607-255-3103
      +1-607-255-4109
Fax: +1-607-255-6683
http://www.gramene.org
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