UniGene Library annotation --Question
Pankaj Jaiswal
pj37 at cornell.edu
Tue Dec 7 11:17:50 EST 2004
Can somebody help me identify which plant structure terms I shall use
for the following as described for the EXT library in GenBank records.
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<http://www.ncbi.nlm.nih.gov/UniGene/library.cgi?ORG=Os&LID=16310>
Organism: Oryza sativa subsp. japonica
Developmental stage: 3-5 leaves plantlets
Sex: hermaphrodite
Cultivar: Nipponbare
Tissue: shoot apex
Organ: shoot apex
Do you think that annotating to the following will be acceptable.
term: shoot apical meristem
Accession: PO:0020148
___________________________________
For the following
http://www.ncbi.nlm.nih.gov/UniGene/library.cgi?ORG=Os&LID=10901
Organism: Oryza sativa (japonica cultivar-group)
Developmental stage: two weeks old seedling
Cultivar: Lansheng
Organ: all plant
According to the recent suggestion, should this be annotated to
"whole plant" term or to the "sporophyte".
Personally I would like to annotate it to term "sporophyte" with an
additional annotation to the appropriate growth stage.
--------------------------------
Similar situation is for the following
http://www.ncbi.nlm.nih.gov/UniGene/library.cgi?ORG=Os&LID=11046
Organism: Oryza sativa
Developmental stage: Two-week-old rice seeding infested by brown
planthopper
Strain: B5 resistant variety to brown planthopper
Vector: pT-Adv
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Pankaj Jaiswal, PhD
G15-Bradfield Hall
Dept. of Plant Breeding
Cornell University
Ithaca, NY-14853, USA
Tel: +1-607-255-3103
+1-607-255-4109
Fax: +1-607-255-6683
http://www.gramene.org
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